View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1391_low_8 (Length: 260)

Name: NF1391_low_8
Description: NF1391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1391_low_8
NF1391_low_8
[»] chr1 (45 HSPs)
chr1 (4-258)||(12993041-12993295)
chr1 (154-250)||(25361883-25361977)
chr1 (132-229)||(6427325-6427422)
chr1 (161-238)||(44482234-44482311)
chr1 (154-250)||(9828041-9828137)
chr1 (131-214)||(9709794-9709877)
chr1 (178-260)||(5944304-5944386)
chr1 (156-250)||(9629866-9629960)
chr1 (154-208)||(25098563-25098617)
chr1 (178-260)||(47989518-47989600)
chr1 (132-233)||(5376483-5376584)
chr1 (158-235)||(36905998-36906075)
chr1 (132-260)||(40917726-40917852)
chr1 (154-214)||(36878458-36878518)
chr1 (132-219)||(10572586-10572673)
chr1 (155-242)||(17754309-17754396)
chr1 (155-250)||(27471532-27471627)
chr1 (194-260)||(25934653-25934719)
chr1 (157-243)||(34371714-34371799)
chr1 (132-214)||(38503295-38503377)
chr1 (132-209)||(398772-398849)
chr1 (167-216)||(1864880-1864929)
chr1 (154-260)||(17831489-17831593)
chr1 (156-220)||(20157346-20157410)
chr1 (154-214)||(29163383-29163443)
chr1 (123-214)||(5898268-5898359)
chr1 (178-249)||(16164282-16164353)
chr1 (156-207)||(19324561-19324612)
chr1 (132-214)||(2896123-2896205)
chr1 (178-260)||(6427485-6427567)
chr1 (167-221)||(7918206-7918260)
chr1 (178-216)||(13997904-13997942)
chr1 (194-256)||(17408728-17408790)
chr1 (156-214)||(38075972-38076030)
chr1 (200-258)||(41597439-41597497)
chr1 (187-232)||(3109698-3109743)
chr1 (157-214)||(40181871-40181928)
chr1 (154-214)||(13436455-13436515)
chr1 (216-260)||(22515854-22515898)
chr1 (194-246)||(30173732-30173784)
chr1 (178-214)||(30749861-30749897)
chr1 (178-214)||(30771312-30771348)
chr1 (154-214)||(39953148-39953208)
chr1 (154-214)||(43492496-43492556)
chr1 (216-260)||(46348350-46348394)
[»] chr7 (27 HSPs)
chr7 (154-253)||(32308117-32308216)
chr7 (132-245)||(15902797-15902910)
chr7 (131-214)||(19206024-19206107)
chr7 (155-214)||(20549789-20549848)
chr7 (154-260)||(24339639-24339745)
chr7 (152-220)||(5548671-5548739)
chr7 (154-213)||(2948680-2948739)
chr7 (154-249)||(6630879-6630974)
chr7 (155-214)||(9482932-9482991)
chr7 (178-248)||(2334271-2334340)
chr7 (167-233)||(3142061-3142127)
chr7 (132-221)||(27945016-27945105)
chr7 (152-248)||(7438701-7438797)
chr7 (132-244)||(26329354-26329466)
chr7 (131-214)||(26733278-26733361)
chr7 (154-236)||(29787351-29787431)
chr7 (156-214)||(598207-598265)
chr7 (222-260)||(8234200-8234238)
chr7 (178-220)||(22602706-22602748)
chr7 (178-251)||(11665405-11665478)
chr7 (157-214)||(42720892-42720949)
chr7 (178-214)||(640134-640170)
chr7 (157-213)||(3520345-3520401)
chr7 (154-214)||(5835244-5835304)
chr7 (178-214)||(24146837-24146873)
chr7 (155-215)||(27093414-27093474)
chr7 (155-215)||(27184827-27184887)
[»] chr5 (33 HSPs)
chr5 (152-232)||(3966498-3966578)
chr5 (194-260)||(6401535-6401601)
chr5 (195-260)||(19453022-19453087)
chr5 (152-247)||(18592068-18592163)
chr5 (167-249)||(30098336-30098418)
chr5 (155-249)||(32766910-32767004)
chr5 (155-260)||(7677703-7677808)
chr5 (137-214)||(16203797-16203874)
chr5 (186-259)||(21542059-21542132)
chr5 (116-243)||(11685898-11686024)
chr5 (132-260)||(21522725-21522853)
chr5 (132-260)||(21533291-21533419)
chr5 (158-214)||(30502390-30502446)
chr5 (158-214)||(30542733-30542789)
chr5 (157-260)||(39698541-39698644)
chr5 (154-220)||(2436919-2436985)
chr5 (160-222)||(17593716-17593778)
chr5 (132-214)||(21191058-21191140)
chr5 (216-260)||(15382533-15382577)
chr5 (194-242)||(21814298-21814346)
chr5 (156-220)||(38749559-38749623)
chr5 (131-250)||(15410414-15410533)
chr5 (154-209)||(27144460-27144515)
chr5 (157-236)||(41091237-41091316)
chr5 (157-219)||(6471886-6471948)
chr5 (157-211)||(18421846-18421900)
chr5 (132-214)||(26312744-26312826)
chr5 (167-216)||(23012408-23012457)
chr5 (158-219)||(36838544-36838605)
chr5 (133-234)||(37328826-37328927)
chr5 (178-214)||(17925174-17925210)
chr5 (186-250)||(30080467-30080531)
chr5 (178-214)||(42029773-42029809)
[»] scaffold0123 (1 HSPs)
scaffold0123 (157-248)||(44493-44584)
[»] chr8 (33 HSPs)
chr8 (178-248)||(11803280-11803350)
chr8 (132-250)||(22651951-22652069)
chr8 (154-213)||(31236580-31236639)
chr8 (155-237)||(4611532-4611614)
chr8 (154-251)||(24362166-24362264)
chr8 (133-242)||(28384967-28385077)
chr8 (132-250)||(29510270-29510388)
chr8 (178-242)||(26902149-26902213)
chr8 (157-260)||(21465412-21465515)
chr8 (156-214)||(12606831-12606889)
chr8 (156-210)||(34897084-34897138)
chr8 (178-260)||(18964198-18964282)
chr8 (152-209)||(20785472-20785529)
chr8 (178-250)||(2572022-2572094)
chr8 (186-250)||(4122215-4122279)
chr8 (154-214)||(13844598-13844658)
chr8 (133-208)||(36934646-36934721)
chr8 (154-213)||(39954282-39954341)
chr8 (154-216)||(7658460-7658522)
chr8 (180-214)||(8293848-8293882)
chr8 (133-219)||(11927083-11927169)
chr8 (178-260)||(15816085-15816167)
chr8 (192-234)||(25172680-25172722)
chr8 (167-249)||(29447077-29447159)
chr8 (180-250)||(29447467-29447537)
chr8 (154-211)||(27213544-27213601)
chr8 (156-253)||(28745497-28745594)
chr8 (156-232)||(29776035-29776109)
chr8 (178-214)||(4786340-4786376)
chr8 (178-214)||(8847277-8847313)
chr8 (150-214)||(12985385-12985449)
chr8 (203-231)||(31763651-31763679)
chr8 (216-260)||(42874570-42874614)
[»] chr2 (25 HSPs)
chr2 (157-247)||(44860320-44860410)
chr2 (186-248)||(35056897-35056959)
chr2 (116-214)||(36409631-36409727)
chr2 (152-214)||(18276516-18276578)
chr2 (132-208)||(21616737-21616813)
chr2 (186-250)||(36756310-36756374)
chr2 (158-220)||(18420430-18420492)
chr2 (155-213)||(23718024-23718082)
chr2 (155-213)||(24105696-24105754)
chr2 (116-250)||(27286258-27286392)
chr2 (178-248)||(28524447-28524517)
chr2 (178-248)||(34784950-34785020)
chr2 (152-210)||(37411250-37411308)
chr2 (167-214)||(5367202-5367249)
chr2 (138-216)||(31284029-31284108)
chr2 (156-249)||(18889557-18889651)
chr2 (178-260)||(30717486-30717568)
chr2 (152-216)||(4332921-4332983)
chr2 (155-216)||(31808075-31808136)
chr2 (137-214)||(37558957-37559034)
chr2 (216-260)||(2438686-2438730)
chr2 (132-260)||(15657839-15657967)
chr2 (178-214)||(20242729-20242765)
chr2 (154-206)||(28677906-28677958)
chr2 (167-215)||(44605140-44605188)
[»] scaffold0003 (1 HSPs)
scaffold0003 (132-260)||(241569-241697)
[»] chr6 (40 HSPs)
chr6 (132-260)||(16766672-16766800)
chr6 (178-260)||(9522912-9522994)
chr6 (132-245)||(10294082-10294195)
chr6 (132-248)||(10339093-10339210)
chr6 (132-220)||(9027153-9027241)
chr6 (154-214)||(9629380-9629440)
chr6 (131-215)||(9658853-9658937)
chr6 (155-214)||(7377977-7378036)
chr6 (154-245)||(26562686-26562777)
chr6 (132-250)||(9107336-9107454)
chr6 (133-210)||(13851712-13851789)
chr6 (158-211)||(30866149-30866202)
chr6 (132-225)||(34073338-34073431)
chr6 (158-214)||(7265595-7265651)
chr6 (154-214)||(19040349-19040409)
chr6 (154-214)||(20371112-20371172)
chr6 (157-220)||(9025490-9025553)
chr6 (167-214)||(9617444-9617491)
chr6 (194-248)||(18367873-18367927)
chr6 (178-260)||(31384941-31385022)
chr6 (131-248)||(8365487-8365604)
chr6 (178-250)||(7248379-7248451)
chr6 (152-216)||(13364705-13364769)
chr6 (194-242)||(16488564-16488612)
chr6 (154-214)||(33001291-33001351)
chr6 (144-214)||(7027228-7027299)
chr6 (167-222)||(7086805-7086860)
chr6 (133-250)||(3398595-3398705)
chr6 (132-214)||(5732512-5732594)
chr6 (152-214)||(7996380-7996442)
chr6 (152-214)||(8022359-8022421)
chr6 (186-236)||(11424691-11424741)
chr6 (152-225)||(34290070-34290141)
chr6 (133-210)||(1681734-1681811)
chr6 (178-247)||(5970077-5970146)
chr6 (178-247)||(8714001-8714070)
chr6 (178-247)||(17302578-17302647)
chr6 (154-214)||(30851599-30851657)
chr6 (167-216)||(32299285-32299334)
chr6 (154-214)||(21924937-21924997)
[»] chr3 (32 HSPs)
chr3 (158-250)||(8039801-8039893)
chr3 (154-260)||(4987247-4987353)
chr3 (178-216)||(24633401-24633439)
chr3 (132-253)||(5441002-5441115)
chr3 (155-214)||(7928448-7928507)
chr3 (132-214)||(8383232-8383314)
chr3 (178-260)||(14832120-14832202)
chr3 (186-248)||(16789041-16789103)
chr3 (132-220)||(9800015-9800103)
chr3 (196-260)||(13806275-13806339)
chr3 (178-214)||(35222959-35222995)
chr3 (158-237)||(1550141-1550220)
chr3 (154-225)||(8039203-8039274)
chr3 (155-214)||(8789552-8789611)
chr3 (157-248)||(10690231-10690321)
chr3 (155-238)||(16192728-16192811)
chr3 (188-243)||(31122093-31122148)
chr3 (132-242)||(11665919-11666029)
chr3 (178-256)||(14209134-14209212)
chr3 (132-214)||(25093477-25093559)
chr3 (215-253)||(45451600-45451638)
chr3 (152-209)||(32804547-32804604)
chr3 (215-260)||(40993302-40993347)
chr3 (157-205)||(9624641-9624689)
chr3 (186-214)||(13414498-13414526)
chr3 (178-234)||(14829710-14829766)
chr3 (216-260)||(20503513-20503557)
chr3 (210-253)||(25651999-25652043)
chr3 (186-250)||(29508473-29508532)
chr3 (178-214)||(40993337-40993373)
chr3 (186-222)||(47775754-47775790)
chr3 (216-260)||(55401123-55401167)
[»] scaffold0110 (1 HSPs)
scaffold0110 (139-222)||(28832-28915)
[»] chr4 (26 HSPs)
chr4 (159-260)||(30982834-30982935)
chr4 (178-249)||(22234857-22234928)
chr4 (157-209)||(3712516-3712568)
chr4 (194-248)||(5414140-5414194)
chr4 (194-260)||(30838247-30838313)
chr4 (186-260)||(37496733-37496807)
chr4 (176-242)||(46083965-46084031)
chr4 (167-248)||(903932-904013)
chr4 (154-214)||(35723386-35723447)
chr4 (154-211)||(40613447-40613504)
chr4 (216-260)||(4157484-4157528)
chr4 (150-214)||(8423720-8423784)
chr4 (157-220)||(18513237-18513300)
chr4 (178-253)||(19312356-19312431)
chr4 (167-249)||(24613668-24613750)
chr4 (216-250)||(29205492-29205526)
chr4 (216-253)||(4157197-4157234)
chr4 (131-248)||(19482642-19482759)
chr4 (161-214)||(33950140-33950193)
chr4 (156-237)||(38148704-38148785)
chr4 (178-219)||(44132641-44132682)
chr4 (158-214)||(7214524-7214580)
chr4 (123-207)||(22440609-22440693)
chr4 (216-260)||(34306771-34306815)
chr4 (132-208)||(36635299-36635375)
chr4 (211-251)||(40481684-40481724)
[»] scaffold0136 (1 HSPs)
scaffold0136 (132-260)||(3805-3933)
[»] scaffold0044 (1 HSPs)
scaffold0044 (154-250)||(53177-53273)
[»] scaffold0036 (1 HSPs)
scaffold0036 (152-247)||(9716-9811)
[»] scaffold1528 (1 HSPs)
scaffold1528 (155-242)||(1033-1120)
[»] scaffold0020 (2 HSPs)
scaffold0020 (178-253)||(137801-137876)
scaffold0020 (155-220)||(135308-135373)
[»] scaffold0279 (1 HSPs)
scaffold0279 (194-248)||(17848-17902)
[»] scaffold0376 (1 HSPs)
scaffold0376 (186-246)||(6341-6401)
[»] scaffold0623 (1 HSPs)
scaffold0623 (194-260)||(5952-6018)
[»] scaffold0022 (1 HSPs)
scaffold0022 (156-221)||(99892-99957)
[»] scaffold0246 (1 HSPs)
scaffold0246 (211-251)||(19623-19663)
[»] scaffold0053 (1 HSPs)
scaffold0053 (216-260)||(8846-8890)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 12993041 - 12993295
Alignment:
Q  4 atgtcgaagaatatatcataagcatcaagacttctgatgagtgctaattgcggtatcaaagatttagaattcgaaccacaaacttttttaatgaactatt 103  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12993041 atgtcaaagaagatatcataagcatcaagacttctgatgagtgctaattgtggtatcaaagatttagaattcgaaccacaaacttttttaatgaactatt 12993140  T
Q  104 aaatttgattccatgaagaacggatatagacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattata 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  12993141 aaatttgattccatgaagaacggatatagacacgacacgtacactaagatgccgacaccgctaataatttacgtaaattacgtaattcaatgtaattata 12993240  T
Q  204 tgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgc 258  Q
    | |||||||||||||||| ||||||||| |||| |||||||||||||| ||||||    
T  12993241 tatgtcggtgttgtgtcaatgttggacatgacatatgtccgacaccgaaatacgc 12993295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 25361883 - 25361977
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    ||||||||| ||||||||||| | ||||||| ||||||| |||||||||||||||| |||| ||||| |||| |||||||  |||||||||||||||    
T  25361883 gccgacaccactgataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggacacg--acatgtccgacaccg 25361977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 6427325 - 6427422
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttgga 229  Q
    |||||| |||| ||||| | | ||| |||||||| |||||||| | ||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||    
T  6427325 gacacggcacggacactgacacgccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtcagggttgga 6427422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 44482234 - 44482311
Alignment:
Q  161 ccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacaca 238  Q
    ||||| |||||||| | ||||||| ||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||    
T  44482234 ccgcttataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacaca 44482311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 9828041 - 9828137
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    ||||||||| || ||||||||   ||||||| ||||||| ||||||| ||||||||||||| ||||| ||||  |||||||||| ||||||||||||    
T  9828041 gccgacaccactaataatttgataaaatcacataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcagacacgacacgtgtccgacaccg 9828137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 9709794 - 9709877
Alignment:
Q  131 agacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||||| ||||| | ||||| |||||||| |||||||| | ||||||| ||||||  |||||||||||||||||||||    
T  9709794 agacacgacacggacactgacatgcctacaccgctaataatttgagaaaatcacataattcgttgtaattatatgtgtcggtgt 9709877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 5944304 - 5944386
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||| ||||||| |||||||||| |||||||||| |||||  ||  |||||| ||||||||||||||||| |||||||||    
T  5944304 aaatcacataattcagtgtaattataagtgtcggtgtcgtgtcgatgacggacacaacacatgtccgacaccgggatacgcct 5944386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 9629960 - 9629866
Alignment:
Q  156 cgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    |||||||||| ||||||||   ||||||  ||||||| ||| |||||| |||||||||| |||||  ||| ||||||||||||||||||||||||    
T  9629960 cgacaccgctaataatttgataaaatcatataattcagtgtgattataagtgtcggtgtcgtgtcgatgtcggacacgacacatgtccgacaccg 9629866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 25098617 - 25098563
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgt 208  Q
    ||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||    
T  25098617 gccgacaccgctgataatttgagaaaatcacataattcagtgtaattatatgtgt 25098563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 47989518 - 47989600
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||| ||||||| |||||||| | |||||||||| ||||| |||| |||||||||||||||| |||| || || ||||||    
T  47989518 aaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacatgtctgacatcgggacacgcct 47989600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 5376584 - 5376483
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||| ||||||| | |||||||||||| |||||||  | |||| || ||||||| |||||||| | |||||||||| |||||  ||| |||||    
T  5376584 gacacgacacggacactaacacgccgacaccgctaataatttaagaaaataacataattcagtgtaattaaaagtgtcggtgtcgtgtcgatgtcggaca 5376485  T
Q  232 cg 233  Q
    ||    
T  5376484 cg 5376483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 36905998 - 36906075
Alignment:
Q  158 acaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgac 235  Q
    |||||||| ||||| || | ||||||| |||||||  |||||||||||||| || ||||||||||||| |||||||||    
T  36905998 acaccgctaataatctgagaaaatcacataattcagagtaattatatgtgttggcgttgtgtcagtgtcggacacgac 36906075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 40917726 - 40917852
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||| | ||| | | |||||||| ||| ||||||||   |||||||  |||| | |||||||| | || ||||||| ||||| ||||||||||    
T  40917726 gacacgacacggatactgacacgccgacacagctaataatttgaaaaaatcac--aattaagtgtaattacaagtctcggtgtcgtgtcggtgttggaca 40917823  T
Q  232 cgacacatgtccgacaccgagatacgcct 260  Q
    |||||| |||||||||||| || ||||||    
T  40917824 cgacacgtgtccgacaccgggacacgcct 40917852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 36878458 - 36878518
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||||| |||||||| | ||||||| ||||||| |||||||||| ||||||||||    
T  36878458 gccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgt 36878518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 10572673 - 10572586
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgt 219  Q
    ||||||||| | ||||| | | ||||||||| || |||||||| | ||||||| ||||||  |||||||| |||||||||||||||||    
T  10572673 gacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcacataattcggtgtaattaaatgtgtcggtgttgtgt 10572586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 17754309 - 17754396
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtc 242  Q
    ||||||||||| ||||||||   |||| || ||||||| ||||| |||||||||| |||| ||||| ||||||||||| ||| |||||    
T  17754309 ccgacaccgctaataatttgaaaaaattacataattcagtgtaactatatgtgtcagtgtggtgtcggtgttggacacaacatatgtc 17754396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 27471627 - 27471532
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    |||| |||||| |||||||| | ||| ||| ||||||| |||||||| |||||| |||||  | || |||||||| ||||||| ||||||||||||    
T  27471627 ccgataccgctaataatttgagaaaagcacataattcagtgtaattacatgtgttggtgtcatatcggtgttggatacgacacgtgtccgacaccg 27471532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 25934653 - 25934719
Alignment:
Q  194 tgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||||||||||||||| | ||||| |||| ||||||||||| |||| ||||| | |||||||||    
T  25934653 tgtaattatatgtgtcggtatcgtgtcggtgtcggacacgacacgtgtctgacacggggatacgcct 25934719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 34371714 - 34371799
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtcc 243  Q
    ||||||||| |||||| | | ||||||| ||||||| ||||||||||||||||||||| ||||  |||| ||| ||||||| |||||    
T  34371714 gacaccgctaataatt-gagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcggatacgacacgtgtcc 34371799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 38503295 - 38503377
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||| |||||| ||||||| |  ||||||||||| |||||||| | ||||||  || |||| |||||||||||||||||||||    
T  38503295 gacatgacacggacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaattatatgtgtcggtgt 38503377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 398849 - 398772
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtc 209  Q
    ||||||||||| ||||| | | |||||||||||| ||||||||   ||||||| ||||||| |||||||||| |||||    
T  398849 gacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattataggtgtc 398772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 1864929 - 1864880
Alignment:
Q  167 ataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttg 216  Q
    |||||||| | ||||||| ||||||| |||||||||||||||||||||||    
T  1864929 ataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgttg 1864880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 17831593 - 17831489
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca-cgacacatgtccgacaccgag 252  Q
    |||||||||||| |||||||| | ||||||| | ||||| |||||| |||||||||   || |||||||||| ||||| |||||  |||||||||||| |    
T  17831593 gccgacaccgctaataatttgagaaaatcacattattcagtgtaatcatatgtgtc---gtcgtgtcagtgtcggacaccgacatgtgtccgacaccggg 17831497  T
Q  253 atacgcct 260  Q
    | ||||||    
T  17831496 acacgcct 17831489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 20157410 - 20157346
Alignment:
Q  156 cgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtc 220  Q
    |||||||||| ||||| || | ||||||| ||||||| |||||| |||||||||||||| |||||    
T  20157410 cgacaccgctaataatgtgagaaaatcacataattcagtgtaatcatatgtgtcggtgtcgtgtc 20157346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 29163443 - 29163383
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||||| | |||||  | ||||||| ||||||||| |||||||||||||||||||    
T  29163443 gccgacaccgctaaaaatttaggaaaatcacataattcaatttaattatatgtgtcggtgt 29163383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 5898359 - 5898268
Alignment:
Q  123 acggatatagacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||  |||| |||||  ||||| ||| |||||||||||| ||||| ||   ||||||| ||||||| |||||||||||| ||||||||    
T  5898359 acggatacggacatgacacagacactgagacgccgacaccgctaataatctgaaaaaatcacataattcagtgtaattatatgcgtcggtgt 5898268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 16164353 - 16164282
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacacc 249  Q
    ||||||| ||||| ||||||||||||||||||  ||| ||||  ||||||||| | |||| |||||||||||    
T  16164353 aaatcacataatttaatgtaattatatgtgtcattgtcgtgttggtgttggacgcaacacgtgtccgacacc 16164282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 19324561 - 19324612
Alignment:
Q  156 cgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtg 207  Q
    |||||| |||||||||||| | ||||||| ||||||| ||||||||||||||    
T  19324561 cgacactgctgataatttgagaaaatcacataattcagtgtaattatatgtg 19324612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 2896205 - 2896123
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||| ||||| ||||| | | |||||||||||| |||||||| | ||||||| ||||||| ||||  ||||| |||||||||    
T  2896205 gacacaacacggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtagctatatatgtcggtgt 2896123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 6427485 - 6427567
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||| ||||||||||||| || | ||||| |||| ||||  | || ||||||||||| |||||||||||| || ||||||    
T  6427485 aaatcacataattcaatgtaactacaagtgtcagtgtcgtgtaggcgtcggacacgacacgtgtccgacaccgggacacgcct 6427567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 7918260 - 7918206
Alignment:
Q  167 ataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtca 221  Q
    |||||||| | ||||||| ||||||| |||||||||||||||| |||| ||||||    
T  7918260 ataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtca 7918206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 13997904 - 13997942
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttg 216  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  13997904 aaatcacataattcagtgtaattatatgtgtcggtgttg 13997942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 17408728 - 17408790
Alignment:
Q  194 tgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatac 256  Q
    ||||||||||| ||||||||||||||  || |  |||||||||| ||||||||||| ||||||    
T  17408728 tgtaattatatatgtcggtgttgtgttggtatcagacacgacacgtgtccgacaccaagatac 17408790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 38076030 - 38075972
Alignment:
Q  156 cgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||| ||| |||||||| ||||||||| ||| ||| |||||| ||||||||||||||    
T  38076030 cgacactgctaataatttgagtaaatcacataagtcagtgtaatcatatgtgtcggtgt 38075972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 41597497 - 41597439
Alignment:
Q  200 tatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgc 258  Q
    ||||||||| ||||||||||| |||| ||||||||||| |||| ||||| | |||||||    
T  41597497 tatatgtgttggtgttgtgtccgtgtcggacacgacacgtgtctgacacggggatacgc 41597439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 3109743 - 3109698
Alignment:
Q  187 aattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacac 232  Q
    |||| |||||||| |||||||||||||||||| |||||| ||||||    
T  3109743 aattgaatgtaatcatatgtgtcggtgttgtgccagtgtaggacac 3109698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 40181871 - 40181928
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||| ||| |||||||| | ||||||| ||||||| ||||||||||||| |||||||    
T  40181871 gacactgctaataatttgagaaaatcacataattcagtgtaattatatgtatcggtgt 40181928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 13436455 - 13436515
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||| ||| |||||||  | ||||||| ||||||| ||||||||||||||| |||||    
T  13436455 gccgacactgctaataatttaaggaaatcacataattcagtgtaattatatgtgttggtgt 13436515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 22515898 - 22515854
Alignment:
Q  216 gtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||| |||| ||||||||||||| ||||||||||||| ||||||    
T  22515898 gtgtcggtgtcggacacgacacatatccgacaccgagacacgcct 22515854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 30173784 - 30173732
Alignment:
Q  194 tgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgac 246  Q
    |||||||| | |||||||||| ||||| || | ||||||||||||||||||||    
T  30173784 tgtaattacaagtgtcggtgtcgtgtccgtatcggacacgacacatgtccgac 30173732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 30749861 - 30749897
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  30749861 aaatcacataattcagtgtaattatatgtgtcggtgt 30749897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 30771312 - 30771348
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  30771312 aaatcacataattcagtgtaattatatgtgtcggtgt 30771348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 39953208 - 39953148
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||||| |||||||  | ||||||| ||||| | ||||||| |||||||||||||    
T  39953208 gccgacaccgctaataattttagaaaatcacataatttagtgtaattgtatgtgtcggtgt 39953148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 43492556 - 43492496
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||||| ||  ||||||| | ||||||||||||||  ||||||||| |||||||||||    
T  43492556 gccgacaccactagtaatttgagaaaatcacgtaattcggtgtaattatgtgtgtcggtgt 43492496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 46348394 - 46348350
Alignment:
Q  216 gtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||| |||| ||||||||||| ||||||||||||||| ||||||    
T  46348394 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcct 46348350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 32308117 - 32308216
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgaga 253  Q
    |||||||||||| |||||||| | ||||||| ||||||| ||||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||||    
T  32308117 gccgacaccgctaataatttgagaaaatcacataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgttggacacgacacatgtccgacaccgaga 32308216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 15902797 - 15902910
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||  ||||| | |||||||||||  | ||||||||   ||||||| ||||| | ||||||||||||||||||||||||||| || | |||||    
T  15902797 gacacgacacagacactgacatgccgacaccaataataatttgataaaatcacataatttagtgtaattatatgtgtcggtgttgtgtcggtatcggaca 15902896  T
Q  232 cgacacatgtccga 245  Q
    ||||||||| ||||    
T  15902897 cgacacatgcccga 15902910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 19206024 - 19206107
Alignment:
Q  131 agacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||||| |||| || | |||||||||||| |||||||| | ||||||| ||||||| | |||||||||||||||||||    
T  19206024 agacacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataattcattataattatatgtgtcggtgt 19206107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 20549789 - 20549848
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||    
T  20549789 ccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggtgt 20549848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 24339639 - 24339745
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgaga 253  Q
    |||||||| ||| ||||||||   ||||||| ||||||| |||||||| | |||||||||| ||||| |||| ||||||||||| | |||||||||| ||    
T  24339639 gccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtatccgacaccggga 24339738  T
Q  254 tacgcct 260  Q
     ||||||    
T  24339739 cacgcct 24339745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 5548671 - 5548739
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtc 220  Q
    ||||||||||||||||||||||| | ||||||  ||||||| |||||||||||||||| |||| |||||    
T  5548671 atgccgacaccgctgataatttgagaaaatcaaataattcagtgtaattatatgtgtcagtgtcgtgtc 5548739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 2948680 - 2948739
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtg 213  Q
    ||||||||||||||||||||  | ||||||||||||| | ||||||||||||||||||||    
T  2948680 gccgacaccgctgataattttagaaaatcacgtaatttagtgtaattatatgtgtcggtg 2948739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 6630974 - 6630879
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacacc 249  Q
    ||||||||| || |||||||| | || |||| ||||||| ||||||||||||||||| ||| ||||  |||| |||||| |||| || ||||||||    
T  6630974 gccgacaccactaataatttgagaaagtcacttaattcagtgtaattatatgtgtcgatgtcgtgttggtgtcggacacaacacgtgcccgacacc 6630879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 9482932 - 9482991
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||| ||||||||||||| | |||||||  |||||| |||||||||||||||||||||    
T  9482932 ccgacatcgctgataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgt 9482991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 2334271 - 2334340
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacac 248  Q
    ||||||| ||||| | |||||||| | |||||||||| ||||| |||| ||||||||||||||||||||||    
T  2334271 aaatcacataatttagtgtaattacaagtgtcggtgtcgtgtc-gtgtcggacacgacacatgtccgacac 2334340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 3142127 - 3142061
Alignment:
Q  167 ataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacg 233  Q
    |||| ||| ||||||||  |||||||||||||| |||||||||||||||||||| |||  |||||||    
T  3142127 ataaattgagtaaatcatataattcaatgtaatcatatgtgtcggtgttgtgtcggtgccggacacg 3142061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 27945016 - 27945105
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtca 221  Q
    ||||||||||| ||||| | | ||||||||| || |||||||| | |||| || ||||||| |||||||| | |||||||||| ||||||    
T  27945016 gacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtca 27945105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 7438701 - 7438797
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacac 248  Q
    |||||||||| | | ||||||||   ||||||| |||||||||||||||| | ||||||||||  |||| ||||   ||||||||||||| ||||||    
T  7438701 atgccgacacagttaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcggtgtcaaacacgacacatgtgcgacac 7438797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 26329466 - 26329354
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||  ||||| | | ||||||| || | |||||||| | ||| |||  |||||| |||||||||||||||||| || ||||| ||||  ||||    
T  26329466 gacacgacacagacactgacacgccgacatcgttaataatttgagaaaaacacacaattcagtgtaattatatgtgtcggcgtcgtgtcggtgtcagaca 26329367  T
Q  232 cgacacatgtccg 244  Q
    |||||| ||||||    
T  26329366 cgacacgtgtccg 26329354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 26733278 - 26733361
Alignment:
Q  131 agacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||||| ||||| | | | |||||||||| ||||||||   ||||||| ||||||| | |||||| ||||||||||||    
T  26733278 agacacgacacggacactgacacgtcgacaccgctaataatttgacaaaatcacataattcagtctaattaaatgtgtcggtgt 26733361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 29787431 - 29787351
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgaca 236  Q
    |||||||||||| |||||||| | ||||||| ||||||| ||||||  ||||||| |||||  |||| |||||||||| ||||    
T  29787431 gccgacaccgctaataatttgagaaaatcacataattcagtgtaat--tatgtgttggtgtaatgtcggtgttggacatgaca 29787351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 598207 - 598265
Alignment:
Q  156 cgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||| |||||||  | ||||||||||||| ||||||||| || ||||||||||    
T  598207 cgacaccgctaataatttaagaaaatcacgtaattaaatgtaattgtaagtgtcggtgt 598265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 8234200 - 8234238
Alignment:
Q  222 gtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  8234200 gtgtcggacacgacacatgtccgacaccgagacacgcct 8234238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 22602748 - 22602706
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtc 220  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||    
T  22602748 aaatcacataattcagtgtaattatatgtgtcggtgtcgtgtc 22602706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 11665478 - 11665405
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccga 251  Q
    ||||||| ||||||| | |||||||| |||||| |||  |||| |||| | ||||||||| |||||||||||||    
T  11665478 aaatcacataattcagtctaattataagtgtcgatgtcatgtcggtgtcgaacacgacacgtgtccgacaccga 11665405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 42720949 - 42720892
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||||| ||||||||   ||||||| ||||| |||||||||||||||||| ||||    
T  42720949 gacaccgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtcagtgt 42720892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 640134 - 640170
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  640134 aaatcacataattcagtgtaattatatgtgtcggtgt 640170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 3520401 - 3520345
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtg 213  Q
    ||||||| | || ||||| | ||||||  ||||||||||||||||||||||||||||    
T  3520401 gacaccgataatcatttgagaaaatcatataattcaatgtaattatatgtgtcggtg 3520345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 5835244 - 5835304
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||||| || ||| |||| | |||| || ||||||| |||||||||||||||||||||    
T  5835244 gccgacaccactaatagtttgagaaaataacataattcagtgtaattatatgtgtcggtgt 5835304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 24146837 - 24146873
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  24146837 aaatcacataattcaatataattatatgtgtcggtgt 24146873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 27093474 - 27093414
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgtt 215  Q
    ||||||||||| |||||||  | ||||||| ||||| | |||||||||||| |||||||||    
T  27093474 ccgacaccgctaataatttaagaaaatcacataatttagtgtaattatatgcgtcggtgtt 27093414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 27184827 - 27184887
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgtt 215  Q
    ||||||||||| |||||||  | ||||||| ||||| | |||||||||||| |||||||||    
T  27184827 ccgacaccgctaataatttaagaaaatcacataatttagtgtaattatatgcgtcggtgtt 27184887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 3966498 - 3966578
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacac 232  Q
    |||||||||||||| |||||||| | |||||||  |||||| ||||||||||||||||||||| |||||||||| ||||||    
T  3966498 atgccgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacac 3966578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 6401535 - 6401601
Alignment:
Q  194 tgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| |||| ||||| | |||||||||    
T  6401535 tgtaattatatgtgtcggtgtcgtgtcagtgtcggacacgacacgtgtctgacacggggatacgcct 6401601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 19453087 - 19453022
Alignment:
Q  195 gtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||||||  |||| |||||||||||    
T  19453087 gtaattatatgtgtcggtgtcgtgtcaatgtcggacacgacacatgtctcacacggagatacgcct 19453022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 18592068 - 18592163
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgaca 247  Q
    |||||||||||||| ||| |||  | |||| || |||||||||||||||||||||| |||||| ||||| |||| |||||| |||| |||| ||||    
T  18592068 atgccgacaccgctaatattttaagaaaattacataattcaatgtaattatatgtgccggtgtcgtgtcggtgtcggacacaacacgtgtctgaca 18592163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 30098336 - 30098418
Alignment:
Q  167 ataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacacc 249  Q
    |||||||| | ||||||| ||||||||||||||||||  ||||||| | | |||||||| ||||||||||| |||| ||||||    
T  30098336 ataatttgagaaaatcacataattcaatgtaattatagatgtcggtatcgagtcagtgtcggacacgacacgtgtcagacacc 30098418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 32767004 - 32766910
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacacc 249  Q
    ||||||||||| |||||||| | ||||| |  ||||||||||||||||||||||  |||| ||||| |||| | | ||||||| |||||||||||    
T  32767004 ccgacaccgctaataatttgagaaaatcgcacaattcaatgtaattatatgtgtttgtgtcgtgtcggtgtcgaaaacgacacgtgtccgacacc 32766910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 7677703 - 7677808
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagat 254  Q
    ||||||| ||| ||||||||   ||||||| ||||||| || ||||| | |||||||||| ||||| ||||  |||||| |||||||||||||||| ||     
T  7677703 ccgacacagctaataatttgaaaaaatcacataattcagtgcaattagaagtgtcggtgtcgtgtcggtgtctgacacgtcacatgtccgacaccgggac 7677802  T
Q  255 acgcct 260  Q
    ||||||    
T  7677803 acgcct 7677808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 16203874 - 16203797
Alignment:
Q  137 gacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||| ||||||| |||||||||| ||| |||||||| | ||||| | ||||| | |||||||||||||||||||||    
T  16203874 gacacggacactaacatgccgacactgctaataatttgagaaaatctcataatttagtgtaattatatgtgtcggtgt 16203797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 21542059 - 21542132
Alignment:
Q  186 taattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcc 259  Q
    ||||||| |||||||| | |||||||||| ||||| |||| ||||||||||| |||||||||||| || |||||    
T  21542059 taattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcc 21542132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 11685898 - 11686024
Alignment:
Q  116 atgaagaacggatatagacacg-acacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||| |||||||  |||||| ||||| ||||| | |||||||||||||| |||||||| | || || | ||||| | |||||||||||||||||||||    
T  11685898 atgaagcacggatacggacacggacacg-acactgacatgccgacaccgctaataatttgagaaagtcgcataatttagtgtaattatatgtgtcggtgt 11685996  T
Q  215 tgtgtcagtgttggacacgacacatgtcc 243  Q
     || || |||| ||||||||||| |||||    
T  11685997 cgt-tcggtgtcggacacgacacgtgtcc 11686024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 21522725 - 21522853
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||| ||||| | | |||||||| ||| |||||||    |||| || ||||||| |||||||| |  ||||||||| ||||| |||| |||||    
T  21522725 gacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggaca 21522824  T
Q  232 cgacacatgtccgacaccgagatacgcct 260  Q
    |||||| |||||| ||||| || ||||||    
T  21522825 cgacacgtgtccggcaccgggacacgcct 21522853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 21533291 - 21533419
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||| ||||| | | |||||||| ||| |||||||    |||| || ||||||| |||||||| |  ||||||||| ||||| |||| |||||    
T  21533291 gacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggaca 21533390  T
Q  232 cgacacatgtccgacaccgagatacgcct 260  Q
    |||||| |||||| ||||| || ||||||    
T  21533391 cgacacgtgtccggcaccgggacacgcct 21533419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 30502446 - 30502390
Alignment:
Q  158 acaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||| |||||||| | ||||||| ||||||| |||||||||||||||||||||    
T  30502446 acaccgctaataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgt 30502390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 30542789 - 30542733
Alignment:
Q  158 acaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||| |||||||| | ||||||| ||||||| |||||||||||||||||||||    
T  30542789 acaccgctaataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgt 30542733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 39698541 - 39698644
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatac 256  Q
    ||||| ||| ||||||||   ||||||| ||||||| |||||||| | ||||| |||| ||||| |||| ||||||||||  | ||||||||||||| ||    
T  39698541 gacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacatgtatccgacaccgagacac 39698640  T
Q  257 gcct 260  Q
    ||||    
T  39698641 gcct 39698644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 2436919 - 2436985
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtc 220  Q
    |||||||||||| |||||||||  ||||||| ||||||  ||| ||||||||||||||||| |||||    
T  2436919 gccgacaccgctaataatttgcaaaaatcacataattcgttgtgattatatgtgtcggtgtcgtgtc 2436985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 17593778 - 17593716
Alignment:
Q  160 accgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcag 222  Q
    |||||| |||||||| | ||||||||||||||| ||||||||||| ||| |||| ||||||||    
T  17593778 accgctaataatttgagaaaatcacgtaattcagtgtaattatatatgttggtggtgtgtcag 17593716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 21191140 - 21191058
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||||||| ||||| | |||||||||| ||| ||||||||   ||||||| ||||||| |||||||| | ||||||||||    
T  21191140 gacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgt 21191058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 15382533 - 15382577
Alignment:
Q  216 gtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  15382533 gtgtcggtgttggacacgacacatgtccgacaccgggacacgcct 15382577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 21814298 - 21814346
Alignment:
Q  194 tgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtc 242  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  21814298 tgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtc 21814346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 38749623 - 38749559
Alignment:
Q  156 cgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtc 220  Q
    |||||||| | ||||||||   |||| || ||||||||||||||||||||||| |||||||||||    
T  38749623 cgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtc 38749559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 15410533 - 15410414
Alignment:
Q  131 agacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggac 230  Q
    |||||||||||| ||||| | | |||||||||||| |||||||  | |||| |  | ||||| |||||| |||||||| |||||||||||  |||| ||     
T  15410533 agacacgacacggacactgacacgccgacaccgctaataatttaagaaaattatatgattcagtgtaatcatatgtgttggtgttgtgtcgatgttcgat 15410434  T
Q  231 acgacacatgtccgacaccg 250  Q
    ||||||  ||||| ||||||    
T  15410433 acgacaagtgtccaacaccg 15410414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 27144460 - 27144515
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtc 209  Q
    |||||||||||| |||||||| | ||||||| ||||| | ||||||||||||||||    
T  27144460 gccgacaccgctaataatttgaggaaatcacataatttagtgtaattatatgtgtc 27144515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 41091316 - 41091237
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgaca 236  Q
    ||||| ||| || ||||| | ||||||| ||||||| ||||||||||||||||| ||| |||||| ||| |||| |||||    
T  41091316 gacactgctaatgatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcaatgtcggacgcgaca 41091237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 6471948 - 6471886
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgt 219  Q
    ||||| ||| |||||||| | ||||||| ||||||| ||||||||||||||| ||||| ||||    
T  6471948 gacacggctaataatttgagaaaatcacataattcagtgtaattatatgtgtgggtgtcgtgt 6471886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 18421900 - 18421846
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcgg 211  Q
    ||||| |||||||||||| | ||||||| |||| || ||||||||||||||||||    
T  18421900 gacactgctgataatttgagaaaatcacataatccagtgtaattatatgtgtcgg 18421846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 26312744 - 26312826
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||||| | ||||| | ||||||| |||||  |||||||| | ||||||  ||||||| ||||||||||||| |||||||    
T  26312744 gacacgacatggacactgatatgccgataccgcaaataatttgagaaaatcaattaattcagtgtaattatatgtatcggtgt 26312826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 23012457 - 23012408
Alignment:
Q  167 ataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttg 216  Q
    |||||||| | ||||||  ||||| |||||||||||||||||||||||||    
T  23012457 ataatttgagaaaatcatataatttaatgtaattatatgtgtcggtgttg 23012408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 36838544 - 36838605
Alignment:
Q  158 acaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgt 219  Q
    |||||||| |||||||| | |||| || ||||| | ||||||||||||||||||||| ||||    
T  36838544 acaccgctaataatttgagaaaattacataatttagtgtaattatatgtgtcggtgtcgtgt 36838605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 37328927 - 37328826
Alignment:
Q  133 acacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacac 232  Q
    |||||||||| ||||| | |  ||||||| ||  ||||||||   |||||||  |||||| |||||||| |||||||||||| ||||| |||| ||||||    
T  37328927 acacgacacggacactgatacaccgacacagcaaataatttgtaaaaatcacaaaattcagtgtaattacatgtgtcggtgtcgtgtcggtgtcggacac 37328828  T
Q  233 ga 234  Q
    ||    
T  37328827 ga 37328826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 17925210 - 17925174
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  17925210 aaatcacataattcaatgtaataatatgtgtcggtgt 17925174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 30080531 - 30080467
Alignment:
Q  186 taattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    |||||||||||||| | | || ||||||| |||| ||||| ||||| |||||||||| |||||||    
T  30080531 taattcaatgtaatcacaagtatcggtgtggtgttagtgtcggacatgacacatgtcggacaccg 30080467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 42029773 - 42029809
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  42029773 aaatcacataattcaatgtaattatatgtatcggtgt 42029809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 44584 - 44493
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacac 248  Q
    ||||||||| | |||||| | ||||||| ||||||| ||||||||||||||||||| | ||||| ||||||||||| |||| ||||||||||    
T  44584 gacaccgctaaaaatttgagaaaatcacataattcagtgtaattatatgtgtcggtatcgtgtcggtgttggacacaacacgtgtccgacac 44493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 11803280 - 11803350
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacac 248  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||    
T  11803280 aaatcacataattcagtgtaattatatgtgttggtgttgtgttggtgttggatacgacacatgtccgacac 11803350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 22651951 - 22652069
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||| ||||| | | |||||||| ||| ||||||||   ||||||| ||||||||| |||||| | |||||||||| ||||| |||| |||||    
T  22651951 gacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggaca 22652050  T
Q  232 cgacacatgtccgacaccg 250  Q
    |||||  ||||||||||||    
T  22652051 cgacatgtgtccgacaccg 22652069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 31236639 - 31236580
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtg 213  Q
    |||||||| ||| |||||||| | ||||||| ||||||||||||||||||||||||||||    
T  31236639 gccgacactgctaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtg 31236580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 4611532 - 4611614
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacac 237  Q
    ||||||||||| |||||||| | |||| || ||||||| ||||||||||||| |||||| |||||| || | |||||||||||    
T  4611532 ccgacaccgctaataatttgagaaaataacataattcagtgtaattatatgtctcggtgctgtgtcggtatcggacacgacac 4611614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 24362264 - 24362166
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgt-tggacacgacacatgtccgacaccga 251  Q
    |||||||||||| |||||||| |  |||||| ||||||| ||||||||||||||||  ||| ||||| ||||  ||||||||||| |||||| ||||||    
T  24362264 gccgacaccgctaataatttgagagaatcacataattcagtgtaattatatgtgtcaatgtcgtgtcggtgtccggacacgacacgtgtccggcaccga 24362166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 28385077 - 28384967
Alignment:
Q  133 acacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacac 232  Q
    |||||||||| ||||| | || ||||||||| | ||||| ||  |||||| | ||||||| |||||||||||||||||||||  |||||||||  |||||    
T  28385077 acacgacacggacactgacataccgacaccgttaataatatgaataaatctcataattcagtgtaattatatgtgtcggtgtcatgtcagtgtcagacac 28384978  T
Q  233 g-acacatgtc 242  Q
    | |||||||||    
T  28384977 gtacacatgtc 28384967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 29510388 - 29510270
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||| ||||| | | |||||||| ||| ||||||||   |||||||  |||||| | |||||| | |||||||||| ||||| |||| |||||    
T  29510388 gacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacaaaattcagtataattacaagtgtcggtgtagtgtcggtgtcggaca 29510289  T
Q  232 cgacacatgtccgacaccg 250  Q
    |||| | ||||||||||||    
T  29510288 cgacgcgtgtccgacaccg 29510270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 26902213 - 26902149
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtc 242  Q
    ||||||| ||||||| ||||||||||||||||||||| || | ||||| ||||||||||| ||||    
T  26902213 aaatcacataattcagtgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtc 26902149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 21465412 - 21465515
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatac 256  Q
    ||||| ||| ||||||||   ||||||  |||||| ||||||||| | |||| ||||| |||||||||| ||||||||||| ||||| |||| | |||||    
T  21465412 gacacagctaataatttgaaaaaatcatataattcgatgtaattacaagtgttggtgtcgtgtcagtgtcggacacgacacgtgtccaacacagggatac 21465511  T
Q  257 gcct 260  Q
    ||||    
T  21465512 gcct 21465515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 12606889 - 12606831
Alignment:
Q  156 cgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||| ||| |||||||| | ||||||  |||||||||||||||||||||||||||||    
T  12606889 cgacactgctaataatttgagaaaatcatataattcaatgtaattatatgtgtcggtgt 12606831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 34897084 - 34897138
Alignment:
Q  156 cgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcg 210  Q
    |||||||||| |||||||| | ||||||| ||||||| |||||||||||||||||    
T  34897084 cgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcg 34897138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 18964198 - 18964282
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcg--gtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||| |||||||||||||||||||||||||  |||| ||||| | |||| ||||||||| ||||  |||| |||| ||||||    
T  18964198 aaatcacataattcaatgtaattatatgtgtcggtgtgtcgtgtcggcgttgaacacgacacctgtctaacacggagacacgcct 18964282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 20785529 - 20785472
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtc 209  Q
    ||||| |||||||| |||||||| | ||||||| ||||| ||||||||||||||||||    
T  20785529 atgccaacaccgctaataatttgaggaaatcacataatttaatgtaattatatgtgtc 20785472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 2572094 - 2572022
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    ||||||| ||||| | |||||||| | |||||||||| ||||| |||| ||||||||||| ||||||| ||||    
T  2572094 aaatcacataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggacacgacacgtgtccgataccg 2572022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 4122279 - 4122215
Alignment:
Q  186 taattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    ||||||| |||||||||||||||||||||||||||| |||   ||||||||| |||  |||||||    
T  4122279 taattcattgtaattatatgtgtcggtgttgtgtcaatgtcaaacacgacacgtgttggacaccg 4122215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 13844658 - 13844598
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||| ||| |||||||| | ||||||| ||||| | |||||||||||||||||||||    
T  13844658 gccgacactgctaataatttgagaaaatcacataattgagtgtaattatatgtgtcggtgt 13844598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 36934646 - 36934721
Alignment:
Q  133 acacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgt 208  Q
    |||||||||| ||||||| | | |||||||||| |||||| |   ||||||| ||||||| |||||||||||||||    
T  36934646 acacgacacggacactaacacgtcgacaccgctaataattcgaaaaaatcacataattcattgtaattatatgtgt 36934721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 39954341 - 39954282
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtg 213  Q
    |||||||||||| |||||||| | ||||||| ||||| | |||||||||||||| |||||    
T  39954341 gccgacaccgctaataatttgagaaaatcacataatttagtgtaattatatgtgacggtg 39954282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 7658460 - 7658522
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttg 216  Q
    ||||||||| || |||||||| | |||| || ||||||| ||||||||||| |||||||||||    
T  7658460 gccgacaccactaataatttgagaaaattacataattcagtgtaattatatttgtcggtgttg 7658522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 8293848 - 8293882
Alignment:
Q  180 atcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||||||||| |||||||||||||||||||||    
T  8293848 atcacgtaattcagtgtaattatatgtgtcggtgt 8293882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 11927169 - 11927083
Alignment:
Q  133 acacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgt 219  Q
    |||||||||| |  |||| | |||||||| | | ||||||||   ||||||| ||||||| ||||||||||||||||||||| ||||    
T  11927169 acacgacacggatgctaatacgccgacactgttaataatttgataaaatcacataattcagtgtaattatatgtgtcggtgtcgtgt 11927083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 15816167 - 15816085
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||| ||||| | |||||||||| |||||||||| ||||  |||| |||||||||||   |||||||||| || ||||||    
T  15816167 aaatcacataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacacgacacgaatccgacaccgggacacgcct 15816085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 25172722 - 25172680
Alignment:
Q  192 aatgtaattatatgtgtcggtgttgtgtcagtgttggacacga 234  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||    
T  25172722 aatgtaattatatgtgtcggtgtcgtgtcaatgtcggacacga 25172680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 29447159 - 29447077
Alignment:
Q  167 ataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacacc 249  Q
    |||||||| | ||||||| ||||||||||||| || | ||||||||||  |||| |||| ||||||||||  |||| ||||||    
T  29447159 ataatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcggtgtcggacacgacatgtgtctgacacc 29447077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 29447467 - 29447537
Alignment:
Q  180 atcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    ||||| ||||| | ||||||||||||||| ||||| ||||| ||||  |||||||||  ||||||||||||    
T  29447467 atcacataattaagtgtaattatatgtgttggtgtcgtgtcggtgtcagacacgacatgtgtccgacaccg 29447537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 27213544 - 27213601
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcgg 211  Q
    |||||||| ||| |||||||  | ||||||| ||||||| ||||||||||||||||||    
T  27213544 gccgacactgctaataatttcagaaaatcacataattcactgtaattatatgtgtcgg 27213601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 253
Target Start/End: Original strand, 28745497 - 28745594
Alignment:
Q  156 cgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgaga 253  Q
    |||||| ||| ||||||||   || |||| ||||||||||||| || |  ||||| ||| ||||| |||| ||||||||||| |||||| ||||||||    
T  28745497 cgacactgctaataatttgaaaaattcacataattcaatgtaactacaaatgtcgatgtcgtgtcggtgtcggacacgacacctgtccgtcaccgaga 28745594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 29776035 - 29776109
Alignment:
Q  156 cgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacac 232  Q
    |||||| ||| |||||||| | ||||||||||||||| | ||||||||  ||||||||||  |||||||| ||||||    
T  29776035 cgacactgctaataatttgagaaaatcacgtaattcagtataattata--tgtcggtgttaagtcagtgtcggacac 29776109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 4786376 - 4786340
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  4786376 aaatcacataattcagtgtaattatatgtgtcggtgt 4786340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 8847277 - 8847313
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  8847277 aaatcacataattcagtgtaattatatgtgtcggtgt 8847313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 12985385 - 12985449
Alignment:
Q  150 agatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||| ||||||  | |||||||| | ||||||| |||||||||||||| |||| |||||||||    
T  12985385 agatgcagacacctataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgt 12985449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 31763651 - 31763679
Alignment:
Q  203 atgtgtcggtgttgtgtcagtgttggaca 231  Q
    |||||||||||||||||||||||||||||    
T  31763651 atgtgtcggtgttgtgtcagtgttggaca 31763679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 42874570 - 42874614
Alignment:
Q  216 gtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||||||||||||| ||||||||| |||| ||||| ||||||    
T  42874570 gtgtcagtgttggacacaacacatgtcggacatcgagacacgcct 42874614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 44860320 - 44860410
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgaca 247  Q
    ||||||||| |||||||| | ||||| | ||||||| ||||||||||||||||||||| ||||  |||||||||||||||  |||||||||    
T  44860320 gacaccgctaataatttgagaaaatcgcataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggacacgacatgtgtccgaca 44860410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 35056897 - 35056959
Alignment:
Q  186 taattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacac 248  Q
    ||||||| ||||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||    
T  35056897 taattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacac 35056959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 36409727 - 36409631
Alignment:
Q  116 atgaagaacggatatagacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||| ||||||| |||||||||||| | ||| | |||||||||||||||||||||||   ||||||| ||||| | ||||||  |||||||||||||    
T  36409727 atgaagcacggatacagacacgacacggatactcacatgccgacaccgctgataatttgaaaaaatcacataatttagtgtaat--tatgtgtcggtgt 36409631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 18276516 - 18276578
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||||||| |||||||| | ||||||| ||||||| ||||||||| |||||||||||    
T  18276516 atgccgacaccgctaataatttgagaaaatcacttaattcagtgtaattatgtgtgtcggtgt 18276578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 21616737 - 21616813
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgt 208  Q
    ||||||||||| ||||  | | |||||||||||| |||||||| | ||||||| ||||||| |||||||||||||||    
T  21616737 gacacgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 36756374 - 36756310
Alignment:
Q  186 taattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    ||||||| |||||||||| |||||||||| |||| ||||| | |||| |||||||||||||||||    
T  36756374 taattcagtgtaattataagtgtcggtgtcgtgttagtgtcgaacacaacacatgtccgacaccg 36756310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 18420492 - 18420430
Alignment:
Q  158 acaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtc 220  Q
    |||| ||| |||||||| | ||||||| |||||||||| ||||||| ||||||||||||||||    
T  18420492 acactgctaataatttgagaaaatcacataattcaatgcaattataagtgtcggtgttgtgtc 18420430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 23718024 - 23718082
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtg 213  Q
    ||||||||||| |||||||| | || |||| ||||||| ||||||||||||||||||||    
T  23718024 ccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtgtcggtg 23718082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 24105696 - 24105754
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtg 213  Q
    ||||||||||| |||||||| | || |||| ||||||| ||||||||||||||||||||    
T  24105696 ccgacaccgctaataatttgagaaagtcacataattcagtgtaattatatgtgtcggtg 24105754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 27286392 - 27286258
Alignment:
Q  116 atgaagaacggatatagacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgtt 215  Q
    |||||| ||||| | |||||||| ||| ||||| | | ||||||| |||| ||||||||   | ||||| ||||| | |||||||||| |||||  |||     
T  27286392 atgaagcacggacacagacacgatacggacactgatacgccgacaacgctaataatttgataagatcacataattaagtgtaattataggtgtcaatgtc 27286293  T
Q  216 gtgtcagtgttggacacgacacatgtccgacaccg 250  Q
     ||||  ||| ||||||||||||||||||||||||    
T  27286292 atgtcgatgtcggacacgacacatgtccgacaccg 27286258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 28524447 - 28524517
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacac 248  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||  |||| |||||| |||| |||| |||||    
T  28524447 aaatcacataattcagtgtaattatatgtgtcgttgttgtgttggtgtcggacacaacacgtgtctgacac 28524517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 34785020 - 34784950
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacac 248  Q
    ||||||| ||||| | ||||||||||||||||||||| ||||| || | ||||||||||| |||| |||||    
T  34785020 aaatcacataatttagtgtaattatatgtgtcggtgtcgtgtcggtatcggacacgacacctgtctgacac 34784950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 37411308 - 37411250
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcg 210  Q
    |||||||||||||| |||||||| | ||||||| ||||||| ||| |||||||||||||    
T  37411308 atgccgacaccgctaataatttgagaaaatcacataattcagtgtgattatatgtgtcg 37411250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 5367202 - 5367249
Alignment:
Q  167 ataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||| | ||||||| ||||||| |||||||||||||||||||||    
T  5367202 ataatttgaggaaatcacataattcagtgtaattatatgtgtcggtgt 5367249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 31284029 - 31284108
Alignment:
Q  138 acacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaatta-tatgtgtcggtgttg 216  Q
    ||||||||||| | | |||||||| ||| |||||||| | ||||||| |||| || |||||||| |||||||||||||||    
T  31284029 acacgtacacttacacgccgacactgctaataatttgagaaaatcacataatccattgtaattattatgtgtcggtgttg 31284108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 18889651 - 18889557
Alignment:
Q  156 cgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca-cgacacatgtccgacacc 249  Q
    |||| ||||| |||| ||| | ||||||| ||||||| |||||| ||||||||||||||  |||  |||| ||||| |||| |||||||||||||    
T  18889651 cgacgccgctaataaattgagaaaatcacataattcagtgtaatcatatgtgtcggtgtcttgtttgtgtcggacaccgacgcatgtccgacacc 18889557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 30717568 - 30717486
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||| ||||||| |||||||| | |||||| ||| |||||  ||| ||||||||||| ||| |||||| | |||||||||    
T  30717568 aaatcacataattcagtgtaattacaagtgtcgatgtcgtgtcgttgtcggacacgacacgtgttcgacactgggatacgcct 30717486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 4332921 - 4332983
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttg 216  Q
    |||||||||| | | |||||||| | ||||||| ||||||||||||||  |||||||||||||||    
T  4332921 atgccgacactgataataatttgggaaaatcacataattcaatgtaat--tatgtgtcggtgttg 4332983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 31808075 - 31808136
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttg 216  Q
    ||||||||||| |||||||    ||||||| ||||||| |||||||||||||||| ||||||    
T  31808075 ccgacaccgctaataatttaacaaaatcacataattcagtgtaattatatgtgtcagtgttg 31808136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 37558957 - 37559034
Alignment:
Q  137 gacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||| ||||| | | |||||||| ||| ||||||||   ||||||| |||||||||||||||| | ||||||||||    
T  37558957 gacacggacactgacacgccgacacagctaataatttgtaaaaatcacataattcaatgtaattacaagtgtcggtgt 37559034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 2438730 - 2438686
Alignment:
Q  216 gtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||| |||| |||||||||||||||||||||||| || ||||||    
T  2438730 gtgtcggtgtcggacacgacacatgtccgacaccgggacacgcct 2438686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 15657839 - 15657967
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||| ||||||| | |||||| |  || ||||||||   ||||||| ||||||| |||||||| |  ||||||||| ||||   ||| ||||     
T  15657839 gacacgacacggacactaacacgccgactcaactaataatttgtaaaaatcacataattcagtgtaattacaaatgtcggtgtcgtgttgatgtcggacg 15657938  T
Q  232 cgacacatgtccgacaccgagatacgcct 260  Q
    |||||| |||||||| ||| || ||||||    
T  15657939 cgacacgtgtccgacgccgggacacgcct 15657967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 20242765 - 20242729
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  20242765 aaatcacataattcagtgtaattatatgtgtcggtgt 20242729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 28677906 - 28677958
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgt 206  Q
    |||||||||||| ||||||||   ||||||| ||||||| |||||||||||||    
T  28677906 gccgacaccgctaataatttgaaaaaatcacataattcagtgtaattatatgt 28677958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 44605188 - 44605140
Alignment:
Q  167 ataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgtt 215  Q
    |||||||| | |||| || |||||||||||||||| |||||||||||||    
T  44605188 ataatttgagaaaataacataattcaatgtaattacatgtgtcggtgtt 44605140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 241569 - 241697
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||| ||||| | | |||||||| ||| ||||||||   ||||||| ||||| | |||||||||  |||||||||| ||||  |||| |||||    
T  241569 gacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacataatttagtgtaattatgagtgtcggtgtcgtgttggtgtcggaca 241668  T
Q  232 cgacacatgtccgacaccgagatacgcct 260  Q
    |||||| |||||||||||| || ||||||    
T  241669 cgacacgtgtccgacaccgggacacgcct 241697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 16766672 - 16766800
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||| | ||||| | | |||||||| ||| ||||||||   ||||||| ||||||| |||||||| | |||||||||| ||||| |||| |||||    
T  16766672 gacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggaca 16766771  T
Q  232 cgacacatgtccgacaccgagatacgcct 260  Q
    | |||| |||||||||||| || ||||||    
T  16766772 caacacgtgtccgacaccgggacacgcct 16766800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 9522912 - 9522994
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||| ||||||| |||||||| | |||||||||||||||| |||| |||  |||||| ||||||||||||||| ||||||    
T  9522912 aaatcacataattcagtgtaattacaagtgtcggtgttgtgtcggtgtcggatccgacacgtgtccgacaccgagacacgcct 9522994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 10294082 - 10294195
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||| | ||| | ||||||| |||||| |||||||| |  |||| | || |||||||||||||||||||||||||| ||||  |||| |||||    
T  10294082 gacacgacacggatactgacatgccgataccgctaataatttgagataatcgcatatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcggaca 10294181  T
Q  232 cgacacatgtccga 245  Q
    |||||  |||||||    
T  10294182 cgacatgtgtccga 10294195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 10339210 - 10339093
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgt-aattatatgtgtcggtgttgtgtcagtgttggac 230  Q
    ||||||||| | ||||| | | |||||||||||   ||||||| | ||||||| ||||||| ||| ||||||||||||| |||  ||||| |||| ||||    
T  10339210 gacacgacatgaacactgacacgccgacaccgcgattaatttgagaaaatcacataattcagtgttaattatatgtgtcagtgccgtgtcggtgtcggac 10339111  T
Q  231 acgacacatgtccgacac 248  Q
    ||||||||||||||||||    
T  10339110 acgacacatgtccgacac 10339093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 9027153 - 9027241
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtc 220  Q
    ||||||||||| ||||| | | |||||||||||| |||||||| |  |||||| ||||||  ||||||||||||||||||||| |||||    
T  9027153 gacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattatatgtgtcggtgtcgtgtc 9027241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 9629380 - 9629440
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||||  |||||||| | ||||||| |||||||||||||||||||||||||||||    
T  9629380 gccgacaccgccaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9629440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 9658853 - 9658937
Alignment:
Q  131 agacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgtt 215  Q
    |||||||||||| ||||| | | |||||||||||| |||||||  | ||||||| ||||||| ||||||||||| ||||||||||    
T  9658853 agacacgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattatatttgtcggtgtt 9658937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 7377977 - 7378036
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||||||| | |||||| | ||||||| |||||||||||||||||||||||||||||    
T  7377977 ccgacaccgctaaaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 7378036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 26562686 - 26562777
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccga 245  Q
    |||||||| ||| | |||||| | ||||||| ||||||| ||||||||||||||||| ||| ||||| |||| | ||||| |||||||||||    
T  26562686 gccgacactgctaaaaatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtcgaacacggcacatgtccga 26562777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 9107454 - 9107336
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||| ||||||| | |||||||| ||| ||||||||   |||||||  |||||| |||||||| | |||||||||| ||||| |||| |||||    
T  9107454 gacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggaca 9107355  T
Q  232 cgacacatgtccgacaccg 250  Q
    | ||   ||||||||||||    
T  9107354 caacgtgtgtccgacaccg 9107336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 13851712 - 13851789
Alignment:
Q  133 acacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcg 210  Q
    |||||||||| ||||| | | | |||||||||| |||||||| | |||| |||||||||| |||||||||||||||||    
T  13851712 acacgacacggacactgacacgtcgacaccgctaataatttgagaaaataacgtaattcagtgtaattatatgtgtcg 13851789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 30866202 - 30866149
Alignment:
Q  158 acaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcgg 211  Q
    |||||||| |||||||| | ||||||| ||||||||||||||||||||||||||    
T  30866202 acaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgtcgg 30866149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 34073431 - 34073338
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgt 225  Q
    ||||||||||| ||||| | ||||| ||| |||| |||||||| | ||||| | ||||||| |||||||||||| |||||||| ||||| ||||    
T  34073431 gacacgacacggacactgacatgccaacatcgctaataatttgagaaaatctcataattcagtgtaattatatgggtcggtgtcgtgtcggtgt 34073338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 7265651 - 7265595
Alignment:
Q  158 acaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||| |||||||| | ||||||| ||||||| |||||||||||||||||||||    
T  7265651 acaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 7265595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 19040349 - 19040409
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||||| |||||||| | ||||||| ||||||| |||||||||||||||| ||||    
T  19040349 gccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgt 19040409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 20371172 - 20371112
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||||| |||||||| | ||||||| ||| ||||||| |||||||||||||||||    
T  20371172 gccgacaccgctaataatttgagaaaatcacataactcaatgtgattatatgtgtcggtgt 20371112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 9025553 - 9025490
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtc 220  Q
    ||||| ||| |||||||| | ||||||| ||||||| ||||||||||||||||||||| |||||    
T  9025553 gacactgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtc 9025490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 9617444 - 9617491
Alignment:
Q  167 ataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||| | ||||||| |||||||||||||||||||||||||||||    
T  9617444 ataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9617491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 18367873 - 18367927
Alignment:
Q  194 tgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacac 248  Q
    ||||||||||||||||||||| ||||| ||||  ||||||||||||||| |||||    
T  18367873 tgtaattatatgtgtcggtgtcgtgtcggtgtcagacacgacacatgtctgacac 18367927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 31384941 - 31385022
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||| ||||||| |||||||| | ||||| |||| |||| ||||||||||||||||| ||||| |||||| || ||||||    
T  31384941 aaatcacataattcagtgtaattacaagtgtcagtgtcgtgt-agtgttggacacgacacgtgtcctacaccgggacacgcct 31385022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 8365604 - 8365487
Alignment:
Q  131 agacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggac 230  Q
    |||||||||||| ||||| | | ||||||||  || ||||||||   | ||||| ||||||  |||||||| | |||||||||| ||||| || | ||||    
T  8365604 agacacgacacggacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaattacaagtgtcggtgtcgtgtcggtatcggac 8365505  T
Q  231 acgacacatgtccgacac 248  Q
    ||||||| ||||||||||    
T  8365504 acgacacgtgtccgacac 8365487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 7248379 - 7248451
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    ||||||| |||||||  |||||||||||||| || || ||||| ||||||||||| |||  ||||||||||||    
T  7248379 aaatcacataattcagggtaattatatgtgttggagtcgtgtcggtgttggacacaacatgtgtccgacaccg 7248451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 13364769 - 13364705
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttg 216  Q
    |||||||||| ||| |||||||| | ||||||  ||||||| |||||| ||||||||||||||||    
T  13364769 atgccgacactgcttataatttgagaaaatcatataattcagtgtaatcatatgtgtcggtgttg 13364705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 16488612 - 16488564
Alignment:
Q  194 tgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtc 242  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||||    
T  16488612 tgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtc 16488564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 33001351 - 33001291
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||| ||| ||||||||   ||||||| ||||| |||||||||||||||||||||||    
T  33001351 gccgacactgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtcggtgt 33001291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 7027228 - 7027299
Alignment:
Q  144 acactaagatgccgacaccgctgataatttg-cgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||| | ||||||||| |||||||||||    ||||||| ||||||| |||||||||||||||||||||    
T  7027228 acactaatacgccgacacccctgataatttgaaaaaaatcacataattcagtgtaattatatgtgtcggtgt 7027299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 7086805 - 7086860
Alignment:
Q  167 ataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcag 222  Q
    |||||||| | ||||||| ||||| | ||||||||||||||||||||| |||||||    
T  7086805 ataatttgagaaaatcacataatttagtgtaattatatgtgtcggtgtagtgtcag 7086860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 3398595 - 3398705
Alignment:
Q  133 acacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacac 232  Q
    |||||||||| ||||| | | |||||||| ||| ||||||||   ||||||  ||||||| |||||||||| || ||||||| ||||      |||||||    
T  3398595 acacgacacggacactgacacgccgacacagctaataatttgaa-aaatcatataattcagtgtaattataagtatcggtgtcgtgt------tggacac 3398687  T
Q  233 gacacatgtccgacaccg 250  Q
    ||||||||||||||||||    
T  3398688 gacacatgtccgacaccg 3398705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 5732594 - 5732512
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||||| | ||||| | | |||||||||| | |||||||| | ||||||| || || | |||||||||||||||||||||    
T  5732594 gacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaattatatgtgtcggtgt 5732512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 7996442 - 7996380
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||| ||| |||||||| | ||||||  ||||||| |||||||||||| ||||||||    
T  7996442 atgccgacactgctaataatttgagaaaatcatataattcagtgtaattatatgcgtcggtgt 7996380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 8022359 - 8022421
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||| ||| |||||||| | ||||||  ||||||| |||||||||||| ||||||||    
T  8022359 atgccgacactgctaataatttgagaaaatcatataattcagtgtaattatatgcgtcggtgt 8022421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 11424741 - 11424691
Alignment:
Q  186 taattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgaca 236  Q
    ||||||||| ||||||||||||| ||||||||||| |||| | ||||||||    
T  11424741 taattcaatataattatatgtgttggtgttgtgtcggtgtcgaacacgaca 11424691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 34290141 - 34290070
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgt 225  Q
    ||||||||||  || ||||||||||  |||||| ||||||| |||||||||  |||||||||| ||||||||||    
T  34290141 atgccgacacaactaataatttgcgagaatcacataattcagtgtaattat--gtgtcggtgtcgtgtcagtgt 34290070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 1681734 - 1681811
Alignment:
Q  133 acacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcg 210  Q
    ||||||||| |||||||| | ||||||||  || ||||||||   ||||||||||||||| |||||||| | ||||||    
T  1681734 acacgacacatacactaacacgccgacacaactaataatttgaaaaaatcacgtaattcagtgtaattacaagtgtcg 1681811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 5970146 - 5970077
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgaca 247  Q
    ||||||| ||||||| |||||||| |  ||| ||||| ||||| |||| ||||||||||||| |||||||    
T  5970146 aaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtcggacacgacacatttccgaca 5970077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 8714001 - 8714070
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgaca 247  Q
    ||||||| ||||||| |||||||| |  ||| ||||| ||||| |||| ||||||||||||| |||||||    
T  8714001 aaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtcggacacgacacatttccgaca 8714070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 17302578 - 17302647
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgaca 247  Q
    ||||||| |||||||||||||||| | |||||  ||| |||||||| || ||||| |||| |||||||||    
T  17302578 aaatcacataattcaatgtaattacaagtgtcattgtcgtgtcagtattagacacaacacgtgtccgaca 17302647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 30851599 - 30851657
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||| ||| |||||||  | |||||||  ||||||||||||||||||||||||||||    
T  30851599 gccgacactgctaataatttaagaaaatcac--aattcaatgtaattatatgtgtcggtgt 30851657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 32299285 - 32299334
Alignment:
Q  167 ataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttg 216  Q
    |||||||| | ||||||| |||||||||||| ||||| ||||||||||||    
T  32299285 ataatttgagaaaatcacataattcaatgtagttatacgtgtcggtgttg 32299334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 21924997 - 21924937
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||| ||| |||||||| | | ||||  ||||||| |||||||||||||||||||||    
T  21924997 gccgacactgctaataatttgagaatatcaaataattcagtgtaattatatgtgtcggtgt 21924937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 8039893 - 8039801
Alignment:
Q  158 acaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    |||||||| |||||||| | |||| |  ||||||| ||||||||||||||||||||| ||||| |||| ||||| || |||||||||||||||    
T  8039893 acaccgctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatgagacatgtccgacaccg 8039801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 4987353 - 4987247
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgaga 253  Q
    |||||||| ||| ||||||||   ||||||| ||||||| |||||||| | |||| ||||  ||||| |||||||||||||||| |||||||||||| ||    
T  4987353 gccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacacgtgtccgacaccggga 4987254  T
Q  254 tacgcct 260  Q
     ||||||    
T  4987253 cacgcct 4987247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 24633439 - 24633401
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttg 216  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24633439 aaatcacgtaattcaatgtaattatatgtgtcggtgttg 24633401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 5441115 - 5441002
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||  ||||| | | |||| ||||||| | |||||| | ||||||| |||||||||| ||||||  |||||||||||||||||      ||||    
T  5441115 gacacgacacagacactgacacgccgtcaccgctaaaaatttgagaaaatcacataattcaatggaattat--gtgtcggtgttgtgtca------gaca 5441024  T
Q  232 cgacacatgtccgacaccgaga 253  Q
    |||||||||||| |||||||||    
T  5441023 cgacacatgtccaacaccgaga 5441002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 7928448 - 7928507
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||||||| ||||||||   ||||||| ||||||| |||||||||||||||||||||    
T  7928448 ccgacaccgctaataatttgaaaaaatcacataattcagtgtaattatatgtgtcggtgt 7928507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 8383232 - 8383314
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||||||| ||| | | | |||||||||||| |||||||| | ||||||  ||||||| |||||||||| ||||||||||    
T  8383232 gacacgacacggacattgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattataagtgtcggtgt 8383314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 14832120 - 14832202
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||| ||| |||||||||||| | ||||| |||| ||||| || | ||||||||||| |||||||||||| || ||||||    
T  14832120 aaatcacataactcaatgtaattacaagtgtcagtgtcgtgtcggtatcggacacgacacgtgtccgacaccgggacacgcct 14832202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 16789041 - 16789103
Alignment:
Q  186 taattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacac 248  Q
    ||||||| |||||||||| |||| ||||| |||||||||| ||||| ||||||||||| ||||    
T  16789041 taattcagtgtaattataagtgttggtgtcgtgtcagtgtcggacatgacacatgtccaacac 16789103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 9800015 - 9800103
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtc 220  Q
    ||||||||||||||||| | | ||||||||| || |||||||| | |||| || ||||||  ||||||| || |||||||||| |||||    
T  9800015 gacacgacacgtacactgacacgccgacacctctaataatttgagaaaattacataattccgtgtaattgtaagtgtcggtgtcgtgtc 9800103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 13806275 - 13806339
Alignment:
Q  196 taattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||||||||||||||| ||||| ||||| ||||| ||||||| ||||| ||| || ||||||    
T  13806275 taattatatgtgtcggtgtcgtgtcggtgttagacacaacacatgaccgaccccgggacacgcct 13806339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 35222959 - 35222995
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||| |||||||||||||||||||||||||||||    
T  35222959 aaatcacataattcaatgtaattatatgtgtcggtgt 35222995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 1550141 - 1550220
Alignment:
Q  158 acaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacac 237  Q
    |||||||| ||||||||   |||||||   ||||| |||||||||| ||||| |||| ||||||||||| ||||||||||    
T  1550141 acaccgctaataatttgaaaaaatcacactattcagtgtaattataggtgtcagtgtcgtgtcagtgttcgacacgacac 1550220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 8039203 - 8039274
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgt 225  Q
    |||||||| | |||||||||| | ||||  | | |||||||||||| ||| |||||||||||||||||||||    
T  8039203 gccgacactgatgataatttgagaaaatggcatgattcaatgtaatcataggtgtcggtgttgtgtcagtgt 8039274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 8789611 - 8789552
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||| ||| |||||||| | ||||||| ||||||  |||||||||||||||||||||    
T  8789611 ccgacacggcttataatttgagaaaatcacataattccgtgtaattatatgtgtcggtgt 8789552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 10690321 - 10690231
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacac 248  Q
    ||||||||| ||||| || | ||||||| ||||||| ||||||||||| ||||||| |||| | ||||| |||||| |||| |||| |||||    
T  10690321 gacaccgctaataatctgagaaaatcacataattcagtgtaattatatttgtcggtattgt-ttagtgtcggacacaacacgtgtctgacac 10690231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 16192811 - 16192728
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacaca 238  Q
    ||||||||| | |||||||| | |||| || ||||||| ||||||||||||||| | ||| ||||| ||||  |||||||||||    
T  16192811 ccgacaccgttaataatttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtcggtgtcagacacgacaca 16192728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 31122148 - 31122093
Alignment:
Q  188 attcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtcc 243  Q
    ||||| ||||||||||||||||||| || |||| |||||| |||| ||||||||||    
T  31122148 attcagtgtaattatatgtgtcggtattatgtcggtgttgaacacaacacatgtcc 31122093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 242
Target Start/End: Original strand, 11665919 - 11666029
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||  ||||||| |  |||||| |||| ||||||||   |||||||  |||| | ||||||||||||||||||||| ||||   |||| ||||    
T  11665919 gacacgacacacacactaacacaccgacaacgctaataatttgataaaatcacacaatttagtgtaattatatgtgtcggtgtcgtgttgatgttagaca 11666018  T
Q  232 cgacacatgtc 242  Q
    |||||| ||||    
T  11666019 cgacacgtgtc 11666029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 14209134 - 14209212
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatac 256  Q
    ||||||| ||||||| |||||||| | ||||| |||| ||||| |||| ||||||||||| ||| ||||| || |||||    
T  14209134 aaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacacgtgtacgacatcgggatac 14209212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 25093477 - 25093559
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||||||  ||||||| | |||||||| | | || ||||| | |||||||  |||||| |||||||||||||||||||||    
T  25093477 gacacgacactgacactaacacgccgacactgttaatgatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgt 25093559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 45451600 - 45451638
Alignment:
Q  215 tgtgtcagtgttggacacgacacatgtccgacaccgaga 253  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  45451600 tgtgtcggtgtcggacacgacacatgtccgacaccgaga 45451638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 32804604 - 32804547
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtc 209  Q
    |||||||||||| | |||||||| | ||||||| ||||| | ||||||||||||||||    
T  32804604 atgccgacaccgttaataatttgagaaaatcacataatttagtgtaattatatgtgtc 32804547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 40993347 - 40993302
Alignment:
Q  215 tgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    |||||| |||| |||||||||||||||||||||||| || ||||||    
T  40993347 tgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcct 40993302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 9624641 - 9624689
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatg 205  Q
    ||||| ||| |||||||| | ||||||| ||||||||||||||||||||    
T  9624641 gacactgctaataatttgagaaaatcacataattcaatgtaattatatg 9624689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 13414498 - 13414526
Alignment:
Q  186 taattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||||||||||||||||||||||    
T  13414498 taattcaatgtaattatatgtgtcggtgt 13414526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 14829710 - 14829766
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacga 234  Q
    ||||||| |||||||  ||||||| | |||||||||| ||||| |||||||||||||    
T  14829710 aaatcacataattcatggtaattacaagtgtcggtgtcgtgtcggtgttggacacga 14829766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 20503513 - 20503557
Alignment:
Q  216 gtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||| ||||||||||||||||||||| ||||||| || ||||||    
T  20503513 gtgtcggtgttggacacgacacatgtctgacaccgggacacgcct 20503557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 25652043 - 25651999
Alignment:
Q  210 ggtgttgtgtcagtgttggaca-cgacacatgtccgacaccgaga 253  Q
    |||||||||||||||||||||| |||||| ||| |||||||||||    
T  25652043 ggtgttgtgtcagtgttggacaccgacacgtgttcgacaccgaga 25651999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 29508473 - 29508532
Alignment:
Q  186 taattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    ||||||| ||||||||||||||||| |||||     |||| |||||||||||| |||||||||||    
T  29508473 taattcagtgtaattatatgtgtcgatgttg-----gtgtcggacacgacacacgtccgacaccg 29508532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 40993373 - 40993337
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  40993373 aaatcacataattcagtgtaattatatgtgtcggtgt 40993337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 47775754 - 47775790
Alignment:
Q  186 taattcaatgtaattatatgtgtcggtgttgtgtcag 222  Q
    |||||||||||||||| |||||| |||||||||||||    
T  47775754 taattcaatgtaattacatgtgttggtgttgtgtcag 47775790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 55401123 - 55401167
Alignment:
Q  216 gtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||| |||| ||||||||||| ||||||||||||||| ||||||    
T  55401123 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcct 55401167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 28832 - 28915
Alignment:
Q  139 cacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcag 222  Q
    |||| ||||||| | |||||||||| | |||||||  | ||||| | |||||||||||||||||||||||||||||||||||||    
T  28832 cacgaacactaacacgccgacaccgttaataatttaagaaaatcgcataattcaatgtaattatatgtgtcggtgttgtgtcag 28915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 260
Target Start/End: Complemental strand, 30982935 - 30982834
Alignment:
Q  159 caccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgc 258  Q
    ||||||| || ||||| | ||||||| || |||| |||||||||| |||||||||| ||||| ||||  |||||||||| |||||||||||| || ||||    
T  30982935 caccgctaatgatttgagaaaatcacatatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgggacacgc 30982836  T
Q  259 ct 260  Q
    ||    
T  30982835 ct 30982834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 22234928 - 22234857
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacacc 249  Q
    ||||||| ||||||| ||||||| ||||||||||||| ||||| ||||  |||||||||| |||||||||||    
T  22234928 aaatcacataattcagtgtaattctatgtgtcggtgtcgtgtcggtgtctgacacgacacgtgtccgacacc 22234857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 3712568 - 3712516
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtc 209  Q
    ||||||||| |||||||| | |||||| |||||||||||||||||||||||||    
T  3712568 gacaccgctaataatttgagaaaatcatgtaattcaatgtaattatatgtgtc 3712516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 5414194 - 5414140
Alignment:
Q  194 tgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacac 248  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||| |||| |||||    
T  5414194 tgtaattatatgtatcggtgtcgtgtcagtgtcggacacgacacgtgtctgacac 5414140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 30838247 - 30838313
Alignment:
Q  194 tgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    |||||||||| || ||||||| |||||||||| |||| |||||| ||||||||||| ||| ||||||    
T  30838247 tgtaattataagtatcggtgtcgtgtcagtgtcggacgcgacacgtgtccgacaccaagacacgcct 30838313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 37496733 - 37496807
Alignment:
Q  186 taattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    |||||||||||||| | | ||||||||||||||||  ||  |||||||||||||||| ||||||| || ||||||    
T  37496733 taattcaatgtaatcacaagtgtcggtgttgtgtcgttgccggacacgacacatgtcggacaccgggacacgcct 37496807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 46084031 - 46083965
Alignment:
Q  176 gtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtc 242  Q
    ||||||||| ||||  | ||||||||||||||||||||| |||||||| | ||||||||||| ||||    
T  46084031 gtaaatcacataatctagtgtaattatatgtgtcggtgtcgtgtcagtatcggacacgacacgtgtc 46083965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 903932 - 904013
Alignment:
Q  167 ataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacac 248  Q
    |||||||| | ||||||| ||||||| ||||||||||||| || || | || || |||||||||||||||  ||||||||||    
T  903932 ataatttgagaaaatcacataattcagtgtaattatatgtatcagtatcgtatcggtgttggacacgacatgtgtccgacac 904013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 35723447 - 35723386
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaat-cacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||||||||||| |||||||| | |||| ||| |||||||||||||||||||||||| ||||    
T  35723447 gccgacaccgctaataatttgagaaaatacacataattcaatgtaattatatgtgtcagtgt 35723386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 40613447 - 40613504
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcgg 211  Q
    |||||||||||| ||| |||| | ||||||| ||||||| ||||||||||||||||||    
T  40613447 gccgacaccgctaatattttgagaaaatcacataattcagtgtaattatatgtgtcgg 40613504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 4157484 - 4157528
Alignment:
Q  216 gtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||||    
T  4157484 gtgtcggtgtcggacacgacacatgtccgacaccgagaaacgcct 4157528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 8423784 - 8423720
Alignment:
Q  150 agatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    |||| ||||||||||| |||||||| | ||||||| ||||||| ||||||||||  |||||||||    
T  8423784 agataccgacaccgctaataatttgagaaaatcacataattcagtgtaattataaatgtcggtgt 8423720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 18513300 - 18513237
Alignment:
Q  157 gacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtc 220  Q
    ||||||| | |||||||| | |||| || |||||||||||||| ||||||||| ||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtc 18513237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 19312356 - 19312431
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgaga 253  Q
    ||||||| | ||||| |||||||||| || ||||||| |||||  ||| ||| ||||||| |||||||||||||||    
T  19312356 aaatcacatgattcagtgtaattataagtatcggtgtcgtgtcgttgtcggatacgacacgtgtccgacaccgaga 19312431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 24613750 - 24613668
Alignment:
Q  167 ataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacacc 249  Q
    |||||||| | ||||||| ||||||||||||| || | ||||||||||  |||| ||||  |||||||||| |||| ||||||    
T  24613750 ataatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacacgacacgtgtctgacacc 24613668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 29205492 - 29205526
Alignment:
Q  216 gtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    ||||| |||||||||||||||||||||||||||||    
T  29205492 gtgtcggtgttggacacgacacatgtccgacaccg 29205526  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 4157197 - 4157234
Alignment:
Q  216 gtgtcagtgttggacacgacacatgtccgacaccgaga 253  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  4157197 gtgtcggtgtcggacacgacacatgtccgacaccgaga 4157234  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 19482642 - 19482759
Alignment:
Q  131 agacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggac 230  Q
    |||||||||||  ||||| | | ||||||||  || ||||||||   | ||||| ||||||  |||||||| | |||| ||||| ||||| || ||||||    
T  19482642 agacacgacacagacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaattacaagtgttggtgtcgtgtcggtattggac 19482741  T
Q  231 acgacacatgtccgacac 248  Q
    ||||||| ||||||||||    
T  19482742 acgacacgtgtccgacac 19482759  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 33950140 - 33950193
Alignment:
Q  161 ccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||| |||||||| | ||||||| ||||| |||||||| ||||||||||||||    
T  33950140 ccgctaataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgt 33950193  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 38148785 - 38148704
Alignment:
Q  156 cgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacac 237  Q
    |||||||||| ||| |||| | ||||||| ||||||| ||||||| ||  ||||| ||| ||||  ||||||||||||||||    
T  38148785 cgacaccgctaatagtttgagaaaatcacataattcagtgtaattttaaatgtcgatgtcgtgttggtgttggacacgacac 38148704  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 44132682 - 44132641
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgt 219  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  44132682 aaatcacgtaattcagtataattatatgtgtcggtgtcgtgt 44132641  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 7214580 - 7214524
Alignment:
Q  158 acaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgt 214  Q
    ||||| || |||||||| | ||||||| ||||| |||||||||||||| ||||||||    
T  7214580 acaccactaataatttgagaaaatcacataatttaatgtaattatatgcgtcggtgt 7214524  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 22440693 - 22440609
Alignment:
Q  123 acggatatagacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtg 207  Q
    ||||||| |||||||||| | ||||| | |   |||||||| | |||||||| | ||||||| ||||||| ||||||||||||||    
T  22440693 acggatacagacacgacatggacactgatacatcgacaccgttaataatttgagaaaatcacataattcagtgtaattatatgtg 22440609  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 34306815 - 34306771
Alignment:
Q  216 gtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||| |||| ||||||||||| ||||||||||||||| ||||||    
T  34306815 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcct 34306771  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 36635299 - 36635375
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgt 208  Q
    |||||||| || ||||| | | ||| ||||| || |||||||| | ||||||| ||||||| |||||||||||||||    
T  36635299 gacacgactcggacactgacacgccaacaccactaataatttgagaaaatcacataattcagtgtaattatatgtgt 36635375  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 40481684 - 40481724
Alignment:
Q  211 gtgttgtgtcagtgttggacacgacacatgtccgacaccga 251  Q
    ||||| |||| |||||||||||||||| |||||||||||||    
T  40481684 gtgttatgtcggtgttggacacgacacgtgtccgacaccga 40481724  T

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Target: scaffold0136 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 260
Target Start/End: Complemental strand, 3933 - 3805
Alignment:
Q  132 gacacgacacgtacactaagatgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggaca 231  Q
    ||||||||||  ||||| | |||||||||| | | |||||||    ||||||| ||||||| |||||||| | ||||| |||| ||||  |||| |||||    
T  3933 gacacgacacagacactgatatgccgacacggttaataatttaaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgttggtgtcggaca 3834  T
Q  232 cgacacatgtccgacaccgagatacgcct 260  Q
    |||||||||||||||| ||||| ||||||    
T  3833 cgacacatgtccgacatcgagacacgcct 3805  T

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Target: scaffold0044 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 53177 - 53273
Alignment:
Q  154 gccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccg 250  Q
    ||||| |||||  |||||||| | ||||||| ||||||| |||||||||| |||||||||  ||||| |||| ||||| ||||| ||||||||||||    
T  53177 gccgataccgccaataatttgagaaaatcacataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatgacacgtgtccgacaccg 53273  T

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Target: scaffold0036 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 9811 - 9716
Alignment:
Q  152 atgccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgaca 247  Q
    |||||||| || || |||||||| | ||||||| ||||||| ||||||||||||||||||||| ||||  ||||  |||||||||| |||| ||||    
T  9811 atgccgacgccactaataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcgtgttggtgtcagacacgacacttgtctgaca 9716  T

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Target: scaffold1528 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 1033 - 1120
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtc 242  Q
    ||||||||||| ||||||||   |||| || ||||||| ||||| |||||||||| |||| ||||| ||||||||||| ||| |||||    
T  1033 ccgacaccgctaataatttgaaaaaattacataattcagtgtaactatatgtgtcagtgtggtgtcggtgttggacacaacaaatgtc 1120  T

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Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 137801 - 137876
Alignment:
Q  178 aaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgaga 253  Q
    |||||||  |||||| |||| | |||||||| ||||| |||||||||| |||||||  ||||||||||||||||||    
T  137801 aaatcacacaattcagtgtagtcatatgtgttggtgtcgtgtcagtgtcggacacggtacatgtccgacaccgaga 137876  T

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Target: scaffold0020; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 135373 - 135308
Alignment:
Q  155 ccgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtc 220  Q
    ||||||| ||| |||||||| | ||||||| ||||||  ||||||||||||||||||||| |||||    
T  135373 ccgacactgctaataatttgagaaaatcacataattctgtgtaattatatgtgtcggtgtcgtgtc 135308  T

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Target: scaffold0279 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 17902 - 17848
Alignment:
Q  194 tgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacac 248  Q
    |||||||||||||| |||||| || || |||||||||||||||| ||||||||||    
T  17902 tgtaattatatgtgacggtgtcgtatcggtgttggacacgacacgtgtccgacac 17848  T

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Target: scaffold0376 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 6341 - 6401
Alignment:
Q  186 taattcaatgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgac 246  Q
    ||||||||||||||||||||||||||||| || || |||| || ||||||||  |||||||    
T  6341 taattcaatgtaattatatgtgtcggtgtcgtatcggtgtggggcacgacacgggtccgac 6401  T

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Target: scaffold0623 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 6018 - 5952
Alignment:
Q  194 tgtaattatatgtgtcggtgttgtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||||||||||||||||||| || || |||| | ||||||||| |||| ||||| |||| ||||||    
T  6018 tgtaattatatgtgtcggtgtcgtatcggtgtcgaacacgacacgtgtctgacacagagacacgcct 5952  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 99892 - 99957
Alignment:
Q  156 cgacaccgctgataatttgcgtaaatcacgtaattcaatgtaattatatgtgtcggtgttgtgtca 221  Q
    |||||||| | |||||||  | |||| || ||||||||||||||||||||||| ||||| ||||||    
T  99892 cgacaccgataataattttagaaaataacataattcaatgtaattatatgtgttggtgtcgtgtca 99957  T

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Target: scaffold0246 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 19623 - 19663
Alignment:
Q  211 gtgttgtgtcagtgttggacacgacacatgtccgacaccga 251  Q
    ||||| |||| |||||||||||||||| |||||||||||||    
T  19623 gtgttatgtcggtgttggacacgacacgtgtccgacaccga 19663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 8846 - 8890
Alignment:
Q  216 gtgtcagtgttggacacgacacatgtccgacaccgagatacgcct 260  Q
    ||||| |||| ||||||||||| ||||||||||||||| ||||||    
T  8846 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcct 8890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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