View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13920_high_1 (Length: 731)
Name: NF13920_high_1
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13920_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Complemental strand, 31607450 - 31606901
Alignment:
| Q |
18 |
gtatcatctacactttgaaagaatgacgatcttttgtgcaacaccatcatcgtgtaccatggaattgagccggacaaagctcccatcaatattgctgccc |
117 |
Q |
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| T |
31607450 |
gtatcatctacactttgaaagaatggtgattttttgtgcaacaccatcatcgtgtaccatggaattgaaccggacaaagctcccatcaatattgctgccc |
31607351 |
T |
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| Q |
118 |
aaggatccaccaatcctggtcacatacataggtaaaaataatgtcattacttgtggacatgtaagcttagaaagaagttttcagaattatatctcgcaac |
217 |
Q |
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| T |
31607350 |
atggatccaccaatccttgtcacatacataggtaaaaataatgtcattacttgtggacatgtaagcttagaaagaagttttcagaattatatctcgcaac |
31607251 |
T |
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| Q |
218 |
tattgaatgtgtcgttttgtgtgagctttacctgcacccggagtaatgcaaacgagaccagtcatcattccttggacagaacctatcaatgagcccttct |
317 |
Q |
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| T |
31607250 |
tactgaatgtgtcgttttgtgtgagctttacctgcacccggtgtgatgcaaacgagaccagtcatcattccttggacagaacctatcaatgagcctttct |
31607151 |
T |
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| Q |
318 |
tgtatacagccatatctagagaaatccaaacaagtatgcttgtagcagtgcacatatgagtattgaatattgccaaggatgtaatctctcccacttgaaa |
417 |
Q |
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| T |
31607150 |
tgtatacagccatatctagagaaatccaaacaagtatgcttgtagcagtgcacaaatgagtattgaatatagccaaggatgtaatctctcccacttgaaa |
31607051 |
T |
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| Q |
418 |
aggcgctcctccgttaaaacctgtccaacccatccataagaaccctgcacctccaagcatgtgaattatgttatttggtggaaaattttgtctatcattt |
517 |
Q |
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| T |
31607050 |
aggcgctcctccgttaaaacctgtccaacccatccataagaaccctgcacctccaagcatgtgaattatgttatttggtggaaaattttgtctatcattt |
31606951 |
T |
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| Q |
518 |
gaagttcttggaccaacctgccattcatcaacattaatcagaagtttaat |
567 |
Q |
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| T |
31606950 |
gaagttcttggaccaacctgccattcatcaacattaatcagaagtttaat |
31606901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 662 - 714
Target Start/End: Complemental strand, 31606867 - 31606815
Alignment:
| Q |
662 |
gcaaaattttacttgaatttgtaaagttttgaaataaaccataattttagtat |
714 |
Q |
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| T |
31606867 |
gcaaaattttacttgagcttgtaaagttttgaaataaaccataattttagtat |
31606815 |
T |
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