View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13920_high_14 (Length: 321)

Name: NF13920_high_14
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13920_high_14
NF13920_high_14
[»] chr7 (1 HSPs)
chr7 (18-304)||(27328068-27328355)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 27328355 - 27328068
Alignment:
Q  18 ggacagatgcaaacaatcttgataatatgagcaacgatcatgttcgagtgtgtctatggtgtttctccatgttgtggtacgttcaagagttactgacttt 117  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27328355 ggacagctgcaaacaatcttgataatatgatcaacgatcatgttcgagtgtgtctatggtgtttgtccatgttgtggtacgttcaagagttactgacttt 27328256  T
Q  118 gggtgacctggatcattgatcaattggacattggcccggtctgaaacaattgctcccct-acctttaattgacgaagtaagatgatgacatgtgttcagt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  27328255 gggtgacctggatcattgatcaattggacattggcccggtctgaaacaattgctcccctaacctttaatcgacgaagtaagatgatgacatgtgttcagt 27328156  T
Q  217 ccatgcttttagagccgtttcatgctacttcttttgcggcctcaagagatttatttatttattttacaatgaagtggattctttgcgg 304  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27328155 ccattctttcagagccgtttcatgctacttcttttgcggcctcaagagatttatttatttattttacaatgaagtggattctttgcgg 27328068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University