View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13920_high_14 (Length: 321)

Name: NF13920_high_14
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13920_high_14
NF13920_high_14
[»] chr7 (1 HSPs)
chr7 (18-304)||(27328068-27328355)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 27328355 - 27328068
Alignment:
18 ggacagatgcaaacaatcttgataatatgagcaacgatcatgttcgagtgtgtctatggtgtttctccatgttgtggtacgttcaagagttactgacttt 117  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
27328355 ggacagctgcaaacaatcttgataatatgatcaacgatcatgttcgagtgtgtctatggtgtttgtccatgttgtggtacgttcaagagttactgacttt 27328256  T
118 gggtgacctggatcattgatcaattggacattggcccggtctgaaacaattgctcccct-acctttaattgacgaagtaagatgatgacatgtgttcagt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
27328255 gggtgacctggatcattgatcaattggacattggcccggtctgaaacaattgctcccctaacctttaatcgacgaagtaagatgatgacatgtgttcagt 27328156  T
217 ccatgcttttagagccgtttcatgctacttcttttgcggcctcaagagatttatttatttattttacaatgaagtggattctttgcgg 304  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27328155 ccattctttcagagccgtttcatgctacttcttttgcggcctcaagagatttatttatttattttacaatgaagtggattctttgcgg 27328068  T

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