View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13920_high_5 (Length: 562)

Name: NF13920_high_5
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13920_high_5
NF13920_high_5
[»] chr5 (8 HSPs)
chr5 (19-562)||(11902665-11903208)
chr5 (33-121)||(11827622-11827710)
chr5 (33-124)||(11859754-11859845)
chr5 (33-124)||(12038513-12038604)
chr5 (30-199)||(11731348-11731517)
chr5 (264-342)||(11731226-11731301)
chr5 (34-124)||(11974974-11975064)
chr5 (437-536)||(11731020-11731119)


Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 19 - 562
Target Start/End: Original strand, 11902665 - 11903208
Alignment:
Q  19 gttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11902665 gttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaaca 11902764  T
Q  119 taacttgtgaagcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcctctccacttctgctatttggtctgctgccaaaattgaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11902765 taacttgtgaagcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcctctccacttctgctatttggtctgctgccaaaattgaa 11902864  T
Q  219 acaccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactccaccacaatccttcacgagttcccattcgatgttgtctt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11902865 acaccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactccaccacaatccttcacgagttcccattcgatgttgtctt 11902964  T
Q  319 gtttgttgttggttgaagttgaagttggcccacgaatttgttggaataacaattgagattcatgtctgttaagccctttcaaaacatacctggcaacaga 418  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11902965 gtttgttgttggttgaggttgaagtttgcccacgaatttgttggaataacaattgagattcatgtctgttaagccctttcaaaacatacctggcaacaga 11903064  T
Q  419 aatattatcggcgacatagttgctacgtgtagtgatgagtattgcccaactggtaccgccagattcagttaatttcttatgcaacttttcaagatcatgc 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11903065 aatattatcggcgacatagttgctacgtgtagtgatgagtattgcccaactggtaccgccagattcagttaatttcttttgcaacttttcaagatcatgc 11903164  T
Q  519 ttaatctcaattcgcaaaacaccgagcacaagtaggcggagtac 562  Q
    |||||||||||||||||| || ||||||||||||||||| ||||    
T  11903165 ttaatctcaattcgcaaatcatcgagcacaagtaggcggcgtac 11903208  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 11827710 - 11827622
Alignment:
Q  33 agaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataa 121  Q
    ||||| |||||| |||||||||||| ||| |||||||| ||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  11827710 agaaacccttcaccagtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataa 11827622  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 11859845 - 11859754
Alignment:
Q  33 agaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt 124  Q
    ||||| |||||||| |||||||||| ||| |||||||| ||||||||||||||||||  ||||||||||||||||||||| || ||||||||    
T  11859845 agaaacccttcagccgtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcgaagcataactt 11859754  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 12038604 - 12038513
Alignment:
Q  33 agaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt 124  Q
    |||||||||||||| ||||| |||| |||||||||||| |||||||| |||||||||  |||||||||||||||||||||||| || |||||    
T  12038604 agaaatccttcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaactt 12038513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 30 - 199
Target Start/End: Complemental strand, 11731517 - 11731348
Alignment:
Q  30 gtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataacttgtgaa 129  Q
    |||| |||||||||||||  ||| |||| |||||||||||| ||||||||||||| || |  |||||||||||||||| ||||||| || || || | |     
T  11731517 gtgataaatccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagcacaatttataac 11731418  T
Q  130 gcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcctctccacttctgctatttg 199  Q
       | |||||||||| ||||||  ||||||||||||| | |||||||| ||||||||| ||| |||||||    
T  11731417 atgtgggaagatcctcgtaatatctaaacttgagctcgtttagaaactccctctccacgtcttctatttg 11731348  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 11731301 - 11731226
Alignment:
Q  264 atcgcaagagggactccaccacaatccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaagttgaag 342  Q
    ||||||||||| ||||| |||||||||||||| |  ||| || ||   |||||||||||||||||||||||||||||||    
T  11731301 atcgcaagaggcactcccccacaatccttcacaatctccaatccg---ttgtcttgtttgttgttggttgaagttgaag 11731226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 11974974 - 11975064
Alignment:
Q  34 gaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt 124  Q
    |||||||||| || ||| |||| | ||||||||||||  |||||||||||| ||||   ||||||||||||||| || ||||||| |||||    
T  11974974 gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaactt 11975064  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 536
Target Start/End: Complemental strand, 11731119 - 11731020
Alignment:
Q  437 gttgctacgtgtagtgatgagtattgcccaactggtaccgccagattcagttaatttcttatgcaacttttcaagatcatgcttaatctcaattcgcaaa 536  Q
    ||||||||||||||||||||||||||| |||| |||||| | ||| ||  |||||   |  |||||||| || ||||||| |||||||||| ||| ||||    
T  11731119 gttgctacgtgtagtgatgagtattgcacaaccggtaccacaagactcctttaatcgttgctgcaacttctcgagatcattcttaatctcatttctcaaa 11731020  T

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