View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13920_high_8 (Length: 469)
Name: NF13920_high_8
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13920_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 360 - 453
Target Start/End: Complemental strand, 276344 - 276251
Alignment:
| Q |
360 |
ttgaaaaccattacatatcaattccttactaccatacaatctagtggtaatgtgaaccatgcattcatataagagacaaagaggacctaatttc |
453 |
Q |
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| T |
276344 |
ttgaaaaccattacatatcaattccttactaccatacaatctagtggtaatgtgaaccatgcattcatataagagacaaagaggacctaatttc |
276251 |
T |
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Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 276517 - 276442
Alignment:
| Q |
132 |
tcgtatgagactgctagatgacaaagtgaagcacaaatgaatatctactatactaatacaagcataatattagtaa |
207 |
Q |
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| T |
276517 |
tcgtatgagactgctagatgacaaagtgaagcacaaatgaatatctactatactaatacaagcataatattagtaa |
276442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 276607 - 276558
Alignment:
| Q |
12 |
atgaaactcaattagcaatatgggattgggaccactcccaaaaataataa |
61 |
Q |
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| T |
276607 |
atgaaactcaatttgcaatatgggattgggaccactcccaaaaataataa |
276558 |
T |
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