View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13920_low_11 (Length: 362)
Name: NF13920_low_11
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13920_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 38936203 - 38935865
Alignment:
| Q |
8 |
aatattgtctcaagaacattctggaggggccaacaaaaaggtacttcttggtgttacgatatcatttggtggagtactatttgtagggatgattggtgtt |
107 |
Q |
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| T |
38936203 |
aatattgtctcaagaacattctggaggggccaacaaaaaggtacttcttggtgttacgatatcatttggtggagtactatttgtagggatgattggtgtt |
38936104 |
T |
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| Q |
108 |
ggaattctactatttcaaaggaaagctaaaaaacttagtgaagaatcccaaagcattgaagataatgatcaatctatttgcatgctatggggaagagatg |
207 |
Q |
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| T |
38936103 |
ggaattctactatttcaaaggaaagctaaaaaacttagtgaagaatcccaaagcattgaagataatgatcaatctatttgcatggtatggggaagagatg |
38936004 |
T |
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| Q |
208 |
ggaaattcacattttctgatcttgttaaagcaaccaatgatttcaatgaaaaatattgcattgggaaaggaggatttggaagtgtttatagagcggaatt |
307 |
Q |
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| T |
38936003 |
ggaaattcacattttctgatcttgttaaagcaaccaatgatttcaacgaaaaatattgcattgggaaaggaggatttggaagtgtttatagagcggaatt |
38935904 |
T |
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| Q |
308 |
ctctacaggtcaagttgttgctgtaaaaagactcaatat |
346 |
Q |
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| T |
38935903 |
ctctacaggtcaagttgttgctgtaaaaagactcaatat |
38935865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 26 - 191
Target Start/End: Original strand, 39306767 - 39306932
Alignment:
| Q |
26 |
ttctggaggggccaacaaaaaggtacttcttggtgttacgatatcatttggtggagtactatttgtagggatgattggtgttggaattctactatttcaa |
125 |
Q |
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| T |
39306767 |
ttctggaggagccaacagaaaggtacttcttggtgttactatatcagttggtggagtactatttatagggatgatttgtgctggaatcttaatatttcga |
39306866 |
T |
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| Q |
126 |
aggaaagctaaaaaacttagtgaagaatcccaaagcattgaagataatgatcaatctatttgcatg |
191 |
Q |
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| T |
39306867 |
aggcaagccaaaaaacacggtgaagaatccaaaaacattgaagataatgatcaatctatttgcatg |
39306932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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