View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13920_low_12 (Length: 362)
Name: NF13920_low_12
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13920_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 21024650 - 21024418
Alignment:
| Q |
17 |
gttaaagtttgatgttctattccggtatgtcttatgctaggtagaatacattttccaatagtaatatacttcattttgatttgttnnnnnnnnnnncaac |
116 |
Q |
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| T |
21024650 |
gttaaagtttgatgttctactccaatatgtcttatgctagggagaatacatttttcaataataatatatttcattttggtttgttaaaaaaaaaaacaac |
21024551 |
T |
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| Q |
117 |
tatttcttctacataaagagaaagatccgatagatattagtactatctatctatgtaattttctcatattagtactatctatgtatataagcttctcatt |
216 |
Q |
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| T |
21024550 |
tatttcttctacataa----------ccggtagatattagtactatctatctatgtaattttctcgtattagtactatctatgtatataagcttctcatt |
21024461 |
T |
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| Q |
217 |
taagctatg--tgtgatttttaataaaataatcaactatgttg |
257 |
Q |
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| T |
21024460 |
taagctatgtgtgtgatttttaataaaataatcaactatgttg |
21024418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 21024366 - 21024319
Alignment:
| Q |
309 |
gttagtgaagaagtcctataaattaaaatactataaataagagtataa |
356 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21024366 |
gttagtgaagaagtctgataaattaaaatactataaataagagtataa |
21024319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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