View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13920_low_13 (Length: 351)
Name: NF13920_low_13
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13920_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 21 - 334
Target Start/End: Complemental strand, 31288659 - 31288347
Alignment:
| Q |
21 |
tgtgatattgcatgaagttttggatgtcattttgctagtaagagacttaactttttgtacatannnnnnnnncttccaataaatcatagctgaagttgga |
120 |
Q |
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| T |
31288659 |
tgtgatattgcatgaagttttggatgtcattttgctagtaagagacttaactttttgtacatatttttttttcttccaataaatcatagctgaagttgga |
31288560 |
T |
|
| Q |
121 |
gagcaaaaagtagttgatgaatatgtcatatagaatcatgagaatgagaggagtgaggaactacaggctcgtgaagacacttcaatggtatcttcacatt |
220 |
Q |
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| T |
31288559 |
gagcaaaaagtagttgatgaatatgtcatatagaatcatgagaatgagaggagtgaggaactacaggctcgtgaagacacttcaatggtatcttcacatt |
31288460 |
T |
|
| Q |
221 |
actttgctttgaatgaagaagctagtagtatcaagattttcnnnnnnnnnngaagatagtagcatcaagatgttatttacaataatattgagaactttca |
320 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31288459 |
actttgctttgaatgaagaagctagtagcatcaagatttt-ttttttttttgaagatagtagcatcaagatgttatttacaataatattgagaactttca |
31288361 |
T |
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| Q |
321 |
tcacctaatatatt |
334 |
Q |
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|||||||||||||| |
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| T |
31288360 |
tcacctaatatatt |
31288347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 21 - 334
Target Start/End: Complemental strand, 31283448 - 31283133
Alignment:
| Q |
21 |
tgtgatattgcatgaagttttggatgtcattttgctagtaagagacttaactttttgtacatannnnnnnnnctt---ccaataaatcatagctgaagtt |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| || ||||||||||| |||| ||||| |
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| T |
31283448 |
tgtgatattgcatggtgttttggatgtcattttgctagtaagagacttgagtttttgtacatatttctattttttttcccaataaatcagagcttaagtt |
31283349 |
T |
|
| Q |
118 |
ggagagcaaaaagtagttgatgaatatgtcatatagaatcatgagaatgagaggagtgaggaactacaggctcgtgaagacacttcaatggtatcttcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31283348 |
ggagagcaaaaagtagttgatgaatatgtcatatagaatcatgagaatgagaggagtgaggaactacaggctcgtgaagacacttcaatggtatcttcac |
31283249 |
T |
|
| Q |
218 |
attactttgctttgaatgaagaagctagtagtatcaagattttcnnnnnnnnnngaagatagtagcatcaagatgttatttacaataatattgagaactt |
317 |
Q |
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| T |
31283248 |
attactttgctttgaatgaagaagctagtagcatcaagatttt-ttttttttttgaagatagtagcatcaagatgttatttacaataatattgagaactt |
31283150 |
T |
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| Q |
318 |
tcatcacctaatatatt |
334 |
Q |
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||||||||||||||||| |
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| T |
31283149 |
tcatcacctaatatatt |
31283133 |
T |
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