View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13920_low_14 (Length: 332)
Name: NF13920_low_14
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13920_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 4476988 - 4476686
Alignment:
| Q |
18 |
tgatgaaggcagctagccatgtcataggaagaaaatgggccccaatccctgctgtaatggcgacatttactgtgtcagggttgatgcatgatttgatctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4476988 |
tgatgaaggcagctagccatgtcataggaagaaaatgggccccaatccctgctgtaatggtgacatttactgtgtcagggttgatgcatgatttgatctt |
4476889 |
T |
|
| Q |
118 |
ctattacatgaagagggaaaaggccacatgggaagcttgggaaccatgttgggattcaatgtgtttctttttcatccatggggtgtgtgtggctcttgaa |
217 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4476888 |
ctatcacatgaagagggagaaggccacatgggaagcttgggaaccatgttgggattcaatgtgtttctttttcatccatggggtgtgtgtggctcttgaa |
4476789 |
T |
|
| Q |
218 |
attgcatacaagaagatcttcaaaccaaaacaccagttattaccaagggttgtgtcttgtaccctaacaatggccttcgttgtgtctactgcgttatact |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4476788 |
attgcatacaagaagatcttcaaaccaaaacaccagttattaccaagggttgtgtcttgtaccctcacaatggccttcgttgtgtctactgcgttatact |
4476689 |
T |
|
| Q |
318 |
tct |
320 |
Q |
| |
|
||| |
|
|
| T |
4476688 |
tct |
4476686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 30 - 308
Target Start/End: Complemental strand, 55653774 - 55653493
Alignment:
| Q |
30 |
ctagccatgtcataggaagaaaatgggccccaatccctgctgtaatggcgacatttactgtgtcagggttgatgcatgatttgatcttctattacatgaa |
129 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||| ||||||| || |||| || ||||| |||||||| ||||||||||| | || || |||||||| || |
|
|
| T |
55653774 |
ctagccatttcatcggaagaaaatgggctccactccctgccgtggtggcaacttttacagtgtcaggtttgatgcatgagctaatattttattacataaa |
55653675 |
T |
|
| Q |
130 |
gagggaaaag---gccacatgggaagcttgggaaccatgttgggattcaatgtgtttctttttcatccatggggtgtgtgtggctcttgaaattgcatac |
226 |
Q |
| |
|
| |||||| | |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |||||||| ||||||| || |
|
|
| T |
55653674 |
acgtgaaaagaaggatacatgggaagcttgggaaccatgttgggattcaatgtgctttttcttcatccatggggtgtgtttggctcttcaaattgcgtat |
55653575 |
T |
|
| Q |
227 |
aagaagatcttcaaaccaaaacaccagttattaccaagggttgtgtcttgtaccctaacaatggccttcgttgtgtctactg |
308 |
Q |
| |
|
|||||| | || ||||||||| | ||||| ||||||||||||||||||| || ||||||| || || |||||||||| |
|
|
| T |
55653574 |
aagaaggtatttgaaccaaaacgtgaattattgccaagggttgtgtcttgtatacttacaatggtttttgtggtgtctactg |
55653493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 142 - 291
Target Start/End: Complemental strand, 55662220 - 55662070
Alignment:
| Q |
142 |
cacatgggaagcttgggaaccatgttgggattcaatgtgtttctttttcatccat-ggggtgtgtgtggctcttgaaattgcatacaagaagatcttcaa |
240 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| ||||||||| |||||||| |||||| ||| |||||| | ||||| |
|
|
| T |
55662220 |
cacatgggaggcttgggagccatattgggattcaatgtgcttcttcttcatccatgggggtgtgtttggctcttcaaattgaatataagaaggtattcaa |
55662121 |
T |
|
| Q |
241 |
accaaaacaccagttattaccaagggttgtgtcttgtaccctaacaatggc |
291 |
Q |
| |
|
||| ||| | ||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
55662120 |
accgaaaggtgaattattgccaagggttgtgtcttgtatacttacaatggc |
55662070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University