View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13920_low_16 (Length: 316)
Name: NF13920_low_16
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13920_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 4 - 316
Target Start/End: Complemental strand, 40000004 - 39999692
Alignment:
| Q |
4 |
tcaattgaaaactcaaaggtaggtgtatctgtaggaaagaaattcgaggtattaaggttaggataatggtcactgtttttgaagaagatataatggtcac |
103 |
Q |
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| T |
40000004 |
tcaattgaaaactcaaaggtaggtgtatctgtaggaaagaaatttgaggtattaaggttaggataatggtcactgtttttgaagaagatataatggtcac |
39999905 |
T |
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| Q |
104 |
tgttgaaacggcatccctagcagctaatgccaatatgtcagcacaagagacagttttggcacatttttcctcgaccgcattttttatgtcattaatgaca |
203 |
Q |
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| T |
39999904 |
agttgaaacggcatccctagcagctaatgccaatatgtcagcacaagagacagttttggcacatttttcctcaaccgcattttttatgtcattaatgaca |
39999805 |
T |
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| Q |
204 |
tcaaagccagccaaagttaaattaggaattgcatccttctctgcagtgttattgctagtggagttcaacaaaactgagccatcgcaacccagaaatgtac |
303 |
Q |
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| T |
39999804 |
tcaaagccagccaaagttaaattaggaattgcatccttctctgcagtgttattgctagtggagttgaacaaaactgagccatcgcaacccagaaatgtac |
39999705 |
T |
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| Q |
304 |
atatttgcaatct |
316 |
Q |
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| T |
39999704 |
atatttgcaatct |
39999692 |
T |
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