View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13920_low_18 (Length: 270)
Name: NF13920_low_18
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13920_low_18 |
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| [»] chr5 (13 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 39726891 - 39726622
Alignment:
| Q |
1 |
aataaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaagacatcaacaaaggtgatttttgtttaagctagtaactagctagatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726891 |
aataaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaaaacatcaacaaaggtgatttttgtttaagctagtaactagctagatc |
39726792 |
T |
|
| Q |
101 |
atccgtcaagcaagtcctccaatggatcaaaaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtagggtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726791 |
atccgtcaagcaagtcctccaatggatcaaaaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtagggtgc |
39726692 |
T |
|
| Q |
201 |
tgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccac |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726691 |
tgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccac |
39726622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 38988165 - 38987903
Alignment:
| Q |
1 |
aataaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaagacatcaacaaaggtgatttttgtttaagctagtaactagctagatc |
100 |
Q |
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|||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||| |
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| T |
38988165 |
aataaatgaagagcagcttccttgattgttgttgttatt---ggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtgactag----atc |
38988073 |
T |
|
| Q |
101 |
atccgtcaagcaagtcctccaatggatcaaaaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtagggtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38988072 |
atccgtcaagcaagtcctccaatggatcaaaaggtctggtaggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtaggctgc |
38987973 |
T |
|
| Q |
201 |
tgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccac |
270 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38987972 |
tgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccac |
38987903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 40418743 - 40418481
Alignment:
| Q |
1 |
aataaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaagacatcaacaaaggtgatttttgtttaagctagtaactagctagatc |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||| |
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| T |
40418743 |
aataaatgaaaagcatcttccttgatttttgttgttatt---ggaacaaacaaaacattaacaaaagtgatttttgtttaagctagtaactag----atc |
40418651 |
T |
|
| Q |
101 |
atccgtcaagcaagtcctccaatggatcaaaaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtagggtgc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||| ||| || ||| |||||||| ||| |
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| T |
40418650 |
atccgtcaagcaagtcctccaatggaacaaaaggtctggtaggggggattacgaagggcccatcatatgtgtagcttttggtttgatctcggtaggctgc |
40418551 |
T |
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| Q |
201 |
tgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccac |
270 |
Q |
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| ||| |||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40418550 |
tcttacgttgaagaggagtttagtgtcttgttgtagatcattgaagaagagttgataatcagattcccac |
40418481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 39880282 - 39880018
Alignment:
| Q |
1 |
aataaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaagacatcaacaaaggtgatttttgtttaagctagtaactagctagatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
39880282 |
aataaatgaaaagcatcttccttgattgttgttgttattattggaacaaaaaa-acatcaacaaaagtgatttttgtttaagctagtaactag----atc |
39880188 |
T |
|
| Q |
101 |
atccgtcaagcaagtcctccaatggatcaaaaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtagggtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||| | ||||||||| |||||||||||| ||| || ||| |||||||| ||| |
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| T |
39880187 |
atccgtcaagcaagtcctccaatggaaaaaaaggtctggtaggggggattctgaagggcccatcatatgtgtagcttttggtttgatctcggtaggctgc |
39880088 |
T |
|
| Q |
201 |
tgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccac |
270 |
Q |
| |
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| ||| |||||| |||| || || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39880087 |
tcttacgctgaagatgagtttagtgttttgttgtagatcattgaagaagagttgataatcagattcccac |
39880018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 1163549 - 1163609
Alignment:
| Q |
210 |
gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccac |
270 |
Q |
| |
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|||||| |||| |||||||||||||||||| || ||||||||||||||| ||||||||||| |
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| T |
1163549 |
gaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccac |
1163609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 1850190 - 1850130
Alignment:
| Q |
210 |
gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccac |
270 |
Q |
| |
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|||||| |||| |||||||||||||| ||| || ||||||||||||||||||||||||||| |
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| T |
1850190 |
gaagaggagtttagggtcttgttgtaaatcttttaagaagagttgataatcagattcccac |
1850130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 3299779 - 3299719
Alignment:
| Q |
210 |
gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccac |
270 |
Q |
| |
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|||||| |||| || ||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
3299779 |
gaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccac |
3299719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 3392672 - 3392612
Alignment:
| Q |
210 |
gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccac |
270 |
Q |
| |
|
|||||| |||| || ||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
3392672 |
gaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccac |
3392612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 1163348 - 1163476
Alignment:
| Q |
1 |
aataaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaagacatcaacaaaggtgatttttgtttaagctagtaactagctagatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||||||| ||||| ||||||| | | ||||| |||||||||||| |||| ||| | ||| |
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| T |
1163348 |
aataaatgaaaagcatcttccttgttt-------ttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatc-atc |
1163439 |
T |
|
| Q |
101 |
atccgtcaagcaagtcctccaatggatcaaaaggtct |
137 |
Q |
| |
|
|||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
1163440 |
atccatcaagcaaatcctccaatggaaaaaaaggtct |
1163476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 39169098 - 39169053
Alignment:
| Q |
225 |
gtcttgttgtagatcattgaagaagagttgataatcagattcccac |
270 |
Q |
| |
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||||||||||||||| || || |||||||||||||||||||||||| |
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| T |
39169098 |
gtcttgttgtagatcttttaaaaagagttgataatcagattcccac |
39169053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 1850290 - 1850248
Alignment:
| Q |
95 |
tagatcatccgtcaagcaagtcctccaatggatcaaaaggtct |
137 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| ||||||||| |
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|
| T |
1850290 |
tagatcatccatcaagcaaatcctccaatggataaaaaggtct |
1850248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 3299947 - 3299852
Alignment:
| Q |
38 |
ttattggaacaaacaagacatcaacaaaggtgatttttgtttaagctagtaactagctagatcatccgtcaagcaagtcctccaatggatcaaaaggtct |
137 |
Q |
| |
|
||||||||| ||||| ||||||| | | ||||| |||||||||||| |||| | | ||||||| |||||||| ||||||||||||| ||||||||| |
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| T |
3299947 |
ttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtgg----atcatccatcaagcaaatcctccaatggataaaaaggtct |
3299852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 3392840 - 3392745
Alignment:
| Q |
38 |
ttattggaacaaacaagacatcaacaaaggtgatttttgtttaagctagtaactagctagatcatccgtcaagcaagtcctccaatggatcaaaaggtct |
137 |
Q |
| |
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||||||||| ||||| ||||||| | | ||||| |||||||||||| |||| | | ||||||| |||||||| ||||||||||||| ||||||||| |
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| T |
3392840 |
ttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtgg----atcatccatcaagcaaatcctccaatggataaaaaggtct |
3392745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 25911914 - 25912175
Alignment:
| Q |
1 |
aataaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaagacatcaacaaaggtgatttttgtttaagctagtaactagctagatc |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
25911914 |
aataaatgtaaagcaccttccttgattgttgttgttattattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtaa----ctagatc |
25912009 |
T |
|
| Q |
101 |
atccgtcaagcaagtcctccaatggatcaaaaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtagggtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||| ||| || ||| || || ||| |
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| T |
25912010 |
atccgtcaagcaagtcctccaatggaacaaaaggtctggtaggggggactacgaagggcccaacatatgtgtagcttttggtttgatctc----ggctgc |
25912105 |
T |
|
| Q |
201 |
tgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccac |
270 |
Q |
| |
|
| ||| ||||||| |||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
25912106 |
tcttacgttgaagatcagtttagggtcttgctgtagataatttaagaagagttgataatcagattcccac |
25912175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 44444410 - 44444535
Alignment:
| Q |
1 |
aataaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaagacatcaacaaaggtgatttttgtttaagctagtaactagctagatc |
100 |
Q |
| |
|
||||||||||| |||| ||||||||||||| | |||||| ||| |||||| ||||||||||| |||||||||||||||||| |||| ||||||| |
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| T |
44444410 |
aataaatgaaaggcatattccttgattgttttcgttatt---ggagtaaacaaaacatcaacaaaagtgatttttgtttaagcttgtaa----ctagatc |
44444502 |
T |
|
| Q |
101 |
atccgtcaagcaagtcctccaatggatcaaaag |
133 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| |
|
|
| T |
44444503 |
atccgtcaagcaagtcctctaatggaacaaaag |
44444535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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