View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13920_low_22 (Length: 238)
Name: NF13920_low_22
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13920_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 52338662 - 52338797
Alignment:
| Q |
77 |
caagataatcaacgcaaaaattagtcttatattaaaataaattcgccaagaaagaacaatcatttatcaaattgaggatatcaaacgagatagcaaatag |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52338662 |
caagataatcaacgcaaaaattagtcttatattaaaataaattcgccaagaaagaacaatcatttatcaaattgaggatatcaaacgagatagcaaatag |
52338761 |
T |
|
| Q |
177 |
cagtgcatcgattttcaagccagtaaccaacaagtg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
52338762 |
cagtgcatcgattttcaagccagtaaccaacaagtg |
52338797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 52336635 - 52336695
Alignment:
| Q |
24 |
ctagaattttaaggtattattgttgtactcattccgattcttaatataaaaaacaagataa |
84 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| ||| |||||||||| |||||| |||| |
|
|
| T |
52336635 |
ctagaattttaaggtattattgatgtacccattctgatccttaatataagaaacaaaataa |
52336695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 9183050 - 9183110
Alignment:
| Q |
24 |
ctagaattttaaggtattattgttgtactcattccgattcttaatataaaaaacaagataa |
84 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||| | |||||||||| |||||| |||| |
|
|
| T |
9183050 |
ctagaattttaaggtattattgatgtacccattccggtccttaatataagaaacaaaataa |
9183110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 28364152 - 28364097
Alignment:
| Q |
24 |
ctagaattttaaggtattattgttgtactcattccgattcttaatataaaaaacaa |
79 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| || | |||||||||| |||||| |
|
|
| T |
28364152 |
ctagaattttaaggtattattgatgtacccattacggtccttaatataagaaacaa |
28364097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 47860972 - 47860912
Alignment:
| Q |
24 |
ctagaattttaaggtattattgttgtactcattccgattcttaatataaaaaacaagataa |
84 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||| | |||||||||| |||||| |||| |
|
|
| T |
47860972 |
ctagaattttaaggtattattgatgtatcaattccggtccttaatataagaaacaaaataa |
47860912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University