View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13920_low_23 (Length: 234)
Name: NF13920_low_23
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13920_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 26266934 - 26267140
Alignment:
| Q |
13 |
attatacttgttactttccatgcaagtgaggttgaaccatcgtaaccaagttggtcgtaaatgtttcgaatttatcagggaaggaaatctttgaggtaat |
112 |
Q |
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| T |
26266934 |
attatacttattactttccatgcaagtgaggttgaaccatcgtaaccaagttggtcgtaaatgttttgaatttatcagggaaggaaatctttgaggtaat |
26267033 |
T |
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| Q |
113 |
tatgaacacttcacaatattaatattctttttgattgagaaattgaggatattattgggagtttgaaatgtgtttgaatgataaaagcatataattaacc |
212 |
Q |
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| T |
26267034 |
tatgaacacttcacaatattaatattatttttgagtgagaaattgaggatattattgggagtttgaaatgtgtttgaatgataaaagcatataattaacc |
26267133 |
T |
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| Q |
213 |
acatact |
219 |
Q |
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||||||| |
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| T |
26267134 |
acatact |
26267140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 23581432 - 23581568
Alignment:
| Q |
13 |
attatacttgttactttccatgcaagtgaggttgaaccatcgtaa----ccaagttggtcgtaaatgtttcgaatttatcagggaaggaaatctttgagg |
108 |
Q |
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| T |
23581432 |
attatacttattactttccatgcaagtgaggttcaaccatcgcaagaaaccaagttggttgtgaatgtttcgaatttatcagggaaggaaatctttcagg |
23581531 |
T |
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| Q |
109 |
ta-attatgaacacttcacaatattaatattcttttt |
144 |
Q |
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| T |
23581532 |
tatgttatgaacacatcaaaatattaatattcttttt |
23581568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 38101723 - 38101663
Alignment:
| Q |
143 |
ttgattgagaaattgaggatattattgggagtttgaaatgtgtttgaatgataaaagcata |
203 |
Q |
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|||| ||||||||||||||| || ||||| ||||||||||||| |||| || |||||||| |
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| T |
38101723 |
ttgagtgagaaattgaggatgttgttgggggtttgaaatgtgtgagaataatcaaagcata |
38101663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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