View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13920_low_3 (Length: 574)
Name: NF13920_low_3
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13920_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 18106912 - 18106723
Alignment:
| Q |
5 |
aatgaaacctataattgagttcatctaacattaaatctctggcatttactccaatttattcttgcaaatgacttacacaaggtatactatgatcaggcta |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18106912 |
aatgaaacctataattgagttcatctaacattaaatctctggtatttactccaatttattcttgcaaatgacttacacaaggtatactatgattaggcta |
18106813 |
T |
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| Q |
105 |
gaagtaataagtnnnnnnncaagtctattgtgcataagcaaacaataatccaattctgctacccacacctaatacaccaaaccagtctatc |
195 |
Q |
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| T |
18106812 |
gaaataataagt-aaaaaacaagtctattgtgcataagcaagcaataatccaattcagttacccacacctaatacaccaaaccagtctatc |
18106723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 339 - 468
Target Start/End: Complemental strand, 18106508 - 18106379
Alignment:
| Q |
339 |
aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggcatactctaggcacaacatgcccg |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18106508 |
aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggcatactctaggcacaacatgcccg |
18106409 |
T |
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| Q |
439 |
aatggcttaaaactaattattaatagggtt |
468 |
Q |
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| T |
18106408 |
aatggcttaaaactaattattaatagggtt |
18106379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 339 - 462
Target Start/End: Complemental strand, 18097390 - 18097267
Alignment:
| Q |
339 |
aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggcatactctaggcacaacatgcccg |
438 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |||| |||||||||||| | |
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| T |
18097390 |
aatcgtcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcattgatcaagtggcacagtctaagcacaacatgcctg |
18097291 |
T |
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| Q |
439 |
aatggcttaaaactaattattaat |
462 |
Q |
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|||||||||||||||||||||||| |
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| T |
18097290 |
aatggcttaaaactaattattaat |
18097267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 339 - 462
Target Start/End: Original strand, 18138863 - 18138986
Alignment:
| Q |
339 |
aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggcatactctaggcacaacatgcccg |
438 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |||||| |||||| |||||| |||||||||||| | |
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| T |
18138863 |
aatcgtcattctgaagcaacaaaacaattttataactgacttctaacaaccaaactcacattcattgatcaagtggcacactctaagcacaacatgcctg |
18138962 |
T |
|
| Q |
439 |
aatggcttaaaactaattattaat |
462 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
18138963 |
aatggcttaaaactaattactaat |
18138986 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 192 - 343
Target Start/End: Complemental strand, 18106703 - 18106531
Alignment:
| Q |
192 |
tatctttcttcattgatatattctaacaaagataaagcttcaattttgtagaaataatgcagtcaaatatgtgtatcaccaaaataataacactacta-- |
289 |
Q |
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||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
18106703 |
tatcttttttctgtgatatattctaactaagataaagcttcaattttgtagaaataatgcagtcaaatatgtgtatcgccaaaataataatactactaac |
18106604 |
T |
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| Q |
290 |
-------------------acaaaagatagaactaactaagcatgaagcaacaaaacaataccataccaatca |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18106603 |
aatatcaaggccgtctacgacaaaagatagaactaactaagcatgaagcaacaaaacaataccataccaatca |
18106531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 37876180 - 37876140
Alignment:
| Q |
250 |
gcagtcaaatatgtgtatcaccaaaataataacactactaa |
290 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
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| T |
37876180 |
gcagtcaaatatgtgtataaccaaaataataacactactaa |
37876140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 37876119 - 37876069
Alignment:
| Q |
289 |
aacaaaagatagaactaactaagcatgaagc-aacaaaacaataccatacc |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| |||||||||||| |
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| T |
37876119 |
aacaaaagatagaactaactaagcatgaagcaaataaaccaataccatacc |
37876069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 459
Target Start/End: Complemental strand, 37875985 - 37875943
Alignment:
| Q |
417 |
tactctaggcacaacatgcccgaatggcttaaaactaattatt |
459 |
Q |
| |
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||||||| || ||||||||| |||||||||||||||||||||| |
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| T |
37875985 |
tactctaagcgcaacatgcctgaatggcttaaaactaattatt |
37875943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 23895501 - 23895541
Alignment:
| Q |
250 |
gcagtcaaatatgtgtatcaccaaaataataacactactaa |
290 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
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| T |
23895501 |
gcagtcaaatatgtgtataaccaaaataataacactactaa |
23895541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 23895562 - 23895612
Alignment:
| Q |
289 |
aacaaaagatagaactaactaagcatgaagc-aacaaaacaataccatacc |
338 |
Q |
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|
||||||||||||||||||||||||||||||| || ||| |||||||||||| |
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|
| T |
23895562 |
aacaaaagatagaactaactaagcatgaagcaaataaaccaataccatacc |
23895612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 459
Target Start/End: Original strand, 23895696 - 23895738
Alignment:
| Q |
417 |
tactctaggcacaacatgcccgaatggcttaaaactaattatt |
459 |
Q |
| |
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||||||| || ||||||||| |||||||||||||||||||||| |
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| T |
23895696 |
tactctaagcgcaacatgcctgaatggcttaaaactaattatt |
23895738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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