View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13920_low_6 (Length: 490)
Name: NF13920_low_6
Description: NF13920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13920_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 52409547 - 52409058
Alignment:
| Q |
1 |
aaataatttgaaaacataaaattgacatttaaacaaataagctggtattaaaatagcttatagtaatgccttacaccatacatttgtcaacataaataaa |
100 |
Q |
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| T |
52409547 |
aaataatttgaaaacataaaattgacatttaaacaaataagctggtattaaaatagcttatagtaatgccttacaccatacatttgtcaacataaataaa |
52409448 |
T |
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| Q |
101 |
gtaaaaaacttgccgtattatgcatttcggcttgcgggggaagacagctgatataaggatgccattcagagtcctgtcatacaatggtatgttgttttgt |
200 |
Q |
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| T |
52409447 |
gtagaaaacttgccgtattatgcatttcggcttgcgggggaagacagctgatataaggatgccattcagagtcctgtcatacaatggtatgttgttttgt |
52409348 |
T |
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| Q |
201 |
gaaattcgcaagagctcgaaaactcgtaaaaatgtagatgaaaagtgtgatacaatacaaatacctggcccaaattcttgtgaattaaaagaacagtagc |
300 |
Q |
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| T |
52409347 |
gaaattcgcaagagctcgaaaactcgtaaaaatgtagatgaaaagtgtgatacaatacaaatacctggcccaaattcttgtgaattaaaagaacagtagc |
52409248 |
T |
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| Q |
301 |
aagttttgcaatatttccaacatctacactgataaaaggtatgatttcatgagggagattatccggagttaattgctgcaaaatcaattaggaacaaaca |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409247 |
aagttttgcaatatttccaacatcttcactgataaaaggtttgatttcaggagggagattatccggagttaattgctgcaaaatcaattaggaacaaaca |
52409148 |
T |
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| Q |
401 |
aattaatcattgtgttgtgaaagtgatgtactatatgataacaattaacaatagagaattaagcgaaccagagaataaggaacttgtaaa |
490 |
Q |
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| T |
52409147 |
aattaatcattgtgttgtgaaagtgatgtactatatgataacaattaacaatagagaattaagcgcaccagagaataaggaacttgtaaa |
52409058 |
T |
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