View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13921_high_3 (Length: 278)
Name: NF13921_high_3
Description: NF13921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13921_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 6095678 - 6095417
Alignment:
| Q |
1 |
atcagtgggaccggggtcttatttttagcaggttcaacaactacacagccaggaaaatcataagcatccctttatctgttaggcgtccaacagacaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6095678 |
atcagtgggaccggggtcttatttttagtaggttcaacaactacacagccaggaaaatcataagcatccctttatctgttaggcgtccaacagacaaaat |
6095579 |
T |
|
| Q |
101 |
catatggcattgggaaaagaatggtgtctactctgtgagatcggcgcatcatgcaatgtgtgaggatagaaactcggagcaggctgaatcctcaaatagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6095578 |
catatggcattgggaaaagaatggtgtctactctgtgagatcggcgcatcatgcaatgtgtgaggatagaaactcggagcaggctgaatcctcaaatagc |
6095479 |
T |
|
| Q |
201 |
aacaattatgagatatggaagcgtatttggagtattcctgtccctaaaagtgcacaaaattt |
262 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
6095478 |
aacaattctgagatatggaagcgtatttggagtactcccgtccctaaaagtgcacaaaattt |
6095417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 32805239 - 32805500
Alignment:
| Q |
1 |
atcagtgggaccggggtcttatttttagcaggttcaacaactacacagccaggaaaatcataagcatccctttatctgttaggcgtccaacagacaaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32805239 |
atcagtgggaccggggtcttatttttagcaggttcaataactacatagccaggaaaatcataagcatccctttatctgttaggcgtccaacagacaaaat |
32805338 |
T |
|
| Q |
101 |
catatggcattgggaaaagaatggtgtctactctgtgagatcggcgcatcatgcaatgtgtgaggatagaaactcggagcaggctgaatcctcaaatagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32805339 |
catatggcattgggaaaagaatggtgtctactctgtgagatcggcgcatcatgcaatgtgtgaggatagaaactcagagcaggctgaatcctcaaatagc |
32805438 |
T |
|
| Q |
201 |
aacaattatgagatatggaagcgtatttggagtattcctgtccctaaaagtgcacaaaattt |
262 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
32805439 |
aacaattctgagatttggaagcgtatttggagcattcccgtccctaaaagtgcacaaaattt |
32805500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University