View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13921_low_1 (Length: 710)

Name: NF13921_low_1
Description: NF13921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13921_low_1
NF13921_low_1
[»] chr6 (15 HSPs)
chr6 (1-700)||(26876717-26877416)
chr6 (253-353)||(26638813-26638913)
chr6 (253-353)||(26744779-26744879)
chr6 (235-326)||(26626514-26626605)
chr6 (235-326)||(26732491-26732582)
chr6 (259-340)||(26827272-26827353)
chr6 (256-327)||(26888243-26888314)
chr6 (253-327)||(31287987-31288064)
chr6 (253-353)||(26805931-26806031)
chr6 (253-327)||(28789775-28789849)
chr6 (253-323)||(28795793-28795863)
chr6 (256-328)||(27657419-27657494)
chr6 (253-287)||(26888393-26888427)
chr6 (258-315)||(26059309-26059366)
chr6 (258-315)||(26079279-26079336)
[»] chr4 (9 HSPs)
chr4 (259-353)||(18720791-18720885)
chr4 (253-353)||(18676261-18676361)
chr4 (259-353)||(18652203-18652297)
chr4 (259-353)||(18686301-18686395)
chr4 (259-353)||(18696107-18696201)
chr4 (257-327)||(18650567-18650638)
chr4 (259-353)||(18728227-18728321)
chr4 (259-327)||(18718786-18718855)
chr4 (265-327)||(18692303-18692366)
[»] scaffold0277 (2 HSPs)
scaffold0277 (253-327)||(10350-10424)
scaffold0277 (253-323)||(1394-1464)
[»] chr5 (1 HSPs)
chr5 (254-310)||(29766647-29766703)
[»] chr1 (2 HSPs)
chr1 (253-328)||(265010-265088)
chr1 (256-326)||(26139436-26139506)
[»] chr7 (1 HSPs)
chr7 (256-310)||(10675106-10675160)
[»] chr2 (1 HSPs)
chr2 (253-311)||(18514576-18514634)


Alignment Details
Target: chr6 (Bit Score: 648; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 1 - 700
Target Start/End: Original strand, 26876717 - 26877416
Alignment:
Q  1 gagtcaatttgtttctctatggctgtgattattgtttgatgaggtgttgccctttccgctttgaaccgaatcatacatgtctatttgatttgggattgga 100  Q
    |||||||||||||| || |||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26876717 gagtcaatttgtttgtcaatggctgtgaatattgtttgatgcgttgttgccctttccgctttgaaccgaatcatacatgtctatttgatttgagattgga 26876816  T
Q  101 agaaaatattagactatatagccaagattatcccgggaaactcgtttgtgaactggaggaagtactgttagaaaatgaatggatttatgtggagcttaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876817 agaaaatattagactatatagccaagattatcccgggaaactcgtttgtgaactggaggaagtactgttagaaaatgaatggatttatgtggagcttaag 26876916  T
Q  201 ttgttagggaggtcattgaatccaagcgaggatgagattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876917 ttgttagggaggtcattgaatccaagcgaggatgagattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagagg 26877016  T
Q  301 aggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatatttgaggacgtgagacttttcgtgggtgcaagaaaagaaaagaaaagg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26877017 aggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatatttgaggacgtgagacttttcgtgggtgcaagaagagaaaagaaaagg 26877116  T
Q  401 ataatcataaagttaactgtcttgttgttgttctctcaataagaggaagcttactccacaatctcaagattgcatgtttgtgattctgtaagtggatgat 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26877117 ataatcataaagttaactgtcttgttgttgttctctcaataagaggaagcttactccacaatctcaagattgcatgtttgtgattctgtaagtgaatgat 26877216  T
Q  501 gtttgtgcagttcaaaatattgtctgaatttactgtgatggatgtttaatttgcagcatgatcgaagttgtgtttgctgttcgacatgtgtccatgtacg 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  26877217 gtttgtgcagttcaaaatattgtctgaatttactgtgatggatgtttaatttgcagcatgatcgaagttgtgtttggtgttcgacatgtgtccatgtccg 26877316  T
Q  601 ttaccgacaattgtgatcacaatcaaatattttatattctcaaattactaccgctgtcaacaaatcaatgccattgttgagtccggtttacgtgtctgtg 700  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26877317 ttacctacaattgtgatcataatcaaatattttatattctcaaattactaccgctgtcaacaaatcaatgccattgttgagtccggtgtacgtgtctgtg 26877416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 253 - 353
Target Start/End: Original strand, 26638813 - 26638913
Alignment:
Q  253 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 352  Q
    |||||| ||||||||||||||| || |||||||||| || ||  |||||||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  26638813 gtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatccttataatagaaagagaaaattagatgaata 26638912  T
Q  353 t 353  Q
    |    
T  26638913 t 26638913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 253 - 353
Target Start/End: Original strand, 26744779 - 26744879
Alignment:
Q  253 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 352  Q
    |||||| ||||||||||||||| || |||||||||| || ||  |||||||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  26744779 gtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatccttataatagaaagagaaaattagatgaata 26744878  T
Q  353 t 353  Q
    |    
T  26744879 t 26744879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 26626514 - 26626605
Alignment:
Q  235 agattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 326  Q
    |||||| || ||||||  ||||||||||||||||||| |||||||||||||||| || || ||| |||||||| ||||||||||||||||||    
T  26626514 agattaaaatattaaggagtgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgaggatgtcatattcaccaatccttat 26626605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 26732491 - 26732582
Alignment:
Q  235 agattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 326  Q
    |||||| || ||||||  ||||||||||||||||||| |||||||||||||||| || || ||| |||||||| ||||||||||||||||||    
T  26732491 agattaaaatattaaggagtgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgaggatgtcatattcaccaatccttat 26732582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 259 - 340
Target Start/End: Original strand, 26827272 - 26827353
Alignment:
Q  259 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaa 340  Q
    |||| ||||| |||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||  | |||||||||    
T  26827272 aaattggaattcacgtgttgaaggagaaaaggagcatggaggaggatgtgatattcaccaatccttatagtagaaagagaaa 26827353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 26888243 - 26888314
Alignment:
Q  256 cacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 327  Q
    |||||||||||||  | |||||||||||||||   | ||| |||||||||||||||||||||||||||||||    
T  26888243 cacaaatgggaattgaagtgttgaaggagaaaggaaacatggaggaggatgtgatattcaccaatccttata 26888314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 31287987 - 31288064
Alignment:
Q  253 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggagg---atgtgatattcaccaatccttata 327  Q
    ||||||||||||||||||||||||| ||||||||||||| |  ||||||||   |||||||||||||| |||| ||||    
T  31287987 gtgcacaaatgggaatccacgtgttaaaggagaaaaacaacgcagaggaggagaatgtgatattcaccgatccatata 31288064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 353
Target Start/End: Original strand, 26805931 - 26806031
Alignment:
Q  253 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 352  Q
    |||| ||||| |||||||||||||| | |||||||| || ||  |||||| ||||| ||||||||||||||||||| | ||||| |||   |||||||||    
T  26805931 gtgctcaaatcggaatccacgtgttaatggagaaaagcaacacggaggagaatgtggtattcaccaatccttatattagaaagacaaaatcagatgaata 26806030  T
Q  353 t 353  Q
    |    
T  26806031 t 26806031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 28789775 - 28789849
Alignment:
Q  253 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 327  Q
    |||| ||||||||||||||||||   |||||||||| || |  ||||||| |||||||||||||| |||||||||    
T  28789775 gtgcgcaaatgggaatccacgtgagtaaggagaaaagcaacgcagaggagaatgtgatattcaccgatccttata 28789849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 28795793 - 28795863
Alignment:
Q  253 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatcct 323  Q
    |||| ||||||||||||||||||  ||||||||||| || |  ||||||| |||||||||||||| |||||    
T  28795793 gtgcgcaaatgggaatccacgtgaggaaggagaaaagcaacgcagaggagaatgtgatattcaccgatcct 28795863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 27657494 - 27657419
Alignment:
Q  256 cacaaatgggaatccacgtgttgaaggagaaaaacagcat---agaggaggatgtgatattcaccaatccttatat 328  Q
    |||||||||||||||||||||||||| |||||| || |||    |||||||||||| |||||||  ||||||||||    
T  27657494 cacaaatgggaatccacgtgttgaagaagaaaagcaacatggatgaggaggatgtggtattcactgatccttatat 27657419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 26888393 - 26888427
Alignment:
Q  253 gtgcacaaatgggaatccacgtgttgaaggagaaa 287  Q
    |||||||||| ||||||||||||||||||||||||    
T  26888393 gtgcacaaattggaatccacgtgttgaaggagaaa 26888427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 26059309 - 26059366
Alignment:
Q  258 caaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattca 315  Q
    ||||||||||||||||||| ||||||||||| || ||| |||| || ||||| |||||    
T  26059309 caaatgggaatccacgtgtggaaggagaaaagcaacatggaggggggtgtgagattca 26059366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 26079279 - 26079336
Alignment:
Q  258 caaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattca 315  Q
    ||||||||||||||||||| ||||||||||| || ||| |||| || ||||| |||||    
T  26079279 caaatgggaatccacgtgtggaaggagaaaagcaacatggaggggggtgtgagattca 26079336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 18720885 - 18720791
Alignment:
Q  259 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 353  Q
    ||||||||||||||||||||||||||||||||| ||   | ||||||||||||||||||||||||||||  | |||||||||  |||||||||||    
T  18720885 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagaaagagaaaattagatgaatat 18720791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 253 - 353
Target Start/End: Complemental strand, 18676361 - 18676261
Alignment:
Q  253 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 352  Q
    ||||| ||||||||||||||||||  ||||||||||||| ||   | ||||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  18676361 gtgcaaaaatgggaatccacgtgtgcaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagaaagagaaaaatagatgaata 18676262  T
Q  353 t 353  Q
    |    
T  18676261 t 18676261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 18652297 - 18652203
Alignment:
Q  259 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 353  Q
    ||||||||||||||||||||||||||||||||| ||   | ||||||||||||||||  ||||||||||  | |||||||||  |||||||||||    
T  18652297 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcattaatccttatagtagaaagagaaaattagatgaatat 18652203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 18686395 - 18686301
Alignment:
Q  259 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 353  Q
    |||||||||||||||||| |||||||||||||| ||   | ||||||||||||||||||||| ||||||  | |||||||||  |||||||||||    
T  18686395 aaatgggaatccacgtgtggaaggagaaaaacaacacgaatgaggatgtgatattcaccaattcttatagtagaaagagaaaattagatgaatat 18686301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 18696201 - 18696107
Alignment:
Q  259 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 353  Q
    |||||||||||||||||| |||||||||||  | |||| | ||||||||||||||||||||||||||||  | ||||||| |  |||||||||||    
T  18696201 aaatgggaatccacgtgtggaaggagaaaagtaacataaatgaggatgtgatattcaccaatccttatagtagaaagagagaattagatgaatat 18696107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 18650638 - 18650567
Alignment:
Q  257 acaaatgggaatccacgt-gttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 327  Q
    |||||| ||||||||| | ||| ||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  18650638 acaaattggaatccactttgttcaagaagaaaagcagcatagagcaggatgtgatattcaccaatccttata 18650567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 18728321 - 18728227
Alignment:
Q  259 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 353  Q
    |||||||||||||||||   ||||||||||||| ||   | ||||||||||||||||||||||||||||  | | |||||||  |||||||||||    
T  18728321 aaatgggaatccacgtgcgcaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagatagagaaaattagatgaatat 18728227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 18718855 - 18718786
Alignment:
Q  259 aaatgggaatccac-gtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 327  Q
    |||| ||||||||| ||||| ||| |||||| |||||||||| |||||||||||||| ||||||||||||    
T  18718855 aaattggaatccactgtgttcaagaagaaaagcagcatagagcaggatgtgatattctccaatccttata 18718786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 327
Target Start/End: Complemental strand, 18692366 - 18692303
Alignment:
Q  265 gaatccac-gtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 327  Q
    |||||||| ||||| ||| ||||||| ||||| ||| ||||||||||||||| |||||||||||    
T  18692366 gaatccactgtgttcaagaagaaaaaaagcatggagcaggatgtgatattcatcaatccttata 18692303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 10424 - 10350
Alignment:
Q  253 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 327  Q
    |||| ||||||||||||||||||   |||||||||| || |  ||||||| |||||||||||||| |||||||||    
T  10424 gtgcgcaaatgggaatccacgtgagtaaggagaaaagcaacgcagaggagaatgtgatattcaccgatccttata 10350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 1464 - 1394
Alignment:
Q  253 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatcct 323  Q
    |||||||||||||||||||||||  || |||||||| || |  ||||||| | |||||||||||| |||||    
T  1464 gtgcacaaatgggaatccacgtgaggatggagaaaagcaacgcagaggagaacgtgatattcaccgatcct 1394  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 29766647 - 29766703
Alignment:
Q  254 tgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgat 310  Q
    |||||||||||||||||| |||||||||| || || ||| || ||||||||||||||    
T  29766647 tgcacaaatgggaatccatgtgttgaaggcgataagcagtatggaggaggatgtgat 29766703  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 265088 - 265010
Alignment:
Q  253 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggagg---atgtgatattcaccaatccttatat 328  Q
    ||||||||||||||||||||| ||| | |||||||| || ||  |||||||   |||| ||||||||||||||||||||    
T  265088 gtgcacaaatgggaatccacgagttaatggagaaaagcaacagggaggaggataatgttatattcaccaatccttatat 265010  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 26139436 - 26139506
Alignment:
Q  256 cacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 326  Q
    ||||||| ||||||||  |||| ||||||||||  ||||| |||||||||||  ||||||| |||||||||    
T  26139436 cacaaattggaatccatatgttcaaggagaaaagaagcatggaggaggatgtcgtattcactaatccttat 26139506  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 10675106 - 10675160
Alignment:
Q  256 cacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgat 310  Q
    |||||||||||||||| |||||||||| |||||||   || ||||||||||||||    
T  10675106 cacaaatgggaatccatgtgttgaaggcgaaaaacgatatggaggaggatgtgat 10675160  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 18514576 - 18514634
Alignment:
Q  253 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgata 311  Q
    ||||||||||| ||||| | |||||||||| ||||| ||| || |||||||||||||||    
T  18514576 gtgcacaaatgagaatctatgtgttgaaggcgaaaagcagtatggaggaggatgtgata 18514634  T

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