View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13921_low_2 (Length: 517)
Name: NF13921_low_2
Description: NF13921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13921_low_2 |
 | |
|
| [»] scaffold0090 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 11 - 500
Target Start/End: Original strand, 32829977 - 32830466
Alignment:
| Q |
11 |
agataatactgactttggagagttgttttcttgaccaaaatctaacgacacaagcgaattagacctcagtggctgttccaagttggagatttcattcttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32829977 |
agataatactgactttggagagttgttttcttgaccaaaatctaacgacacaagcgaattagacctcagtggctgttccaagttggagatttcattcttt |
32830076 |
T |
|
| Q |
111 |
gggatttcaacaagtttacgtgggtaaggatgaatcggcttccgttttggtcttggaggtggaatttcaattgtctccaccattgttgtatcattcccat |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32830077 |
gggatttcaactagtttacgtgggtaaggatgaatcggcttccgttttggtcttggaggtggaatttcaattgtctccaccattgttgtatcattcccat |
32830176 |
T |
|
| Q |
211 |
cagtgtctcgattgatctgtcaaaatagtcaaaataaaagagttaatagtgaattcaagataaaattttcaagtttcaacctcaaggaagtttgcattta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32830177 |
cagtgtctcgattgatctgtcaaaatagtcgaaataaaagagttaatagtgaaatcaagataaaattttcaagtttcaacctcaaggaagtttgcattta |
32830276 |
T |
|
| Q |
311 |
gcatctccaagggccattcatcggaaattttcacttaatatatggtttatggtgcattagaataaatcaataaaccttagnnnnnnncttctgagcatga |
410 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32830277 |
gcatctccaagggccattcatcagaaattttcacttaatatatggtttatggtgcattagaataaatcaataaaccttagaaaaaaacttctgagcatga |
32830376 |
T |
|
| Q |
411 |
cttcgaatctgcacagcagtctttgtgccaacatgttctgtggtgaaaataaaggatccaaaaacttagaccatattttctgattcatta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32830377 |
cttcgaatctgcacagcagtctttgtgccaacatgttctgtggtgaaaataaaggatccaaaaacttagaccatattttctgattcatta |
32830466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 29065410 - 29065323
Alignment:
| Q |
398 |
cttctgagcatgacttcgaatctgcacagcagtctttgtgccaacatgttctgtg--gtgaaaataaaggatccaaaaacttagacca |
483 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| || |||||||||||| | ||||||||| ||| ||||||||||||| |
|
|
| T |
29065410 |
cttctgagcatgacttcgaatctggatcgcagtctttgaaccgacatgttctgtgtcgagaaaataaataatctcaaaacttagacca |
29065323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 483
Target Start/End: Original strand, 4434651 - 4434701
Alignment:
| Q |
433 |
ttgtgccaacatgttctgtggtgaaaataaaggatccaaaaacttagacca |
483 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
4434651 |
ttgtgccaacatgttttgtggtgaaaataaacaatctcaaaacttagacca |
4434701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 14768 - 14812
Alignment:
| Q |
182 |
tgtctccaccattgttgtatcattcccatcagtgtctcgattgat |
226 |
Q |
| |
|
|||||||||||||||||| ||||||||| | |||||||| ||||| |
|
|
| T |
14768 |
tgtctccaccattgttgtgtcattcccaacggtgtctcgtttgat |
14812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University