View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13922_high_11 (Length: 301)
Name: NF13922_high_11
Description: NF13922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13922_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 34679269 - 34679084
Alignment:
| Q |
9 |
agatgaatattggagggctattagtataggtaattatatatacaacaaagataaaattgtacagtcagaccctcgtctctcccacaaattgtcact---- |
104 |
Q |
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| T |
34679269 |
agatgaatattggaggactattagtataggtaattatatatacaacaa-gataaaattgtacagtcagaccctcgtctctcccacaaattgtcactggca |
34679171 |
T |
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| Q |
105 |
-tca-ctgggtgcaatttgagatatcttgagtgaggaaaatttgatttaaatagatatttagag-cttgagagtaaagtttcaaatt |
188 |
Q |
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| T |
34679170 |
ctcagctgggtgcaatttgagatatcttgagtgaggaaaatttgatttaaatagatatttagagtgaagagagtaaagtttcaaatt |
34679084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 34679018 - 34678933
Alignment:
| Q |
188 |
tatgggactgactatatctatatctagtgttcacacaaattgttttctactttttatttatatcatagatttagatgatattttaa |
273 |
Q |
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| T |
34679018 |
tatgggactgactatatctatatctagtgttcacacaaattgttttctactttttatttatatcatagatttagatgatattttaa |
34678933 |
T |
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