View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13922_high_15 (Length: 260)
Name: NF13922_high_15
Description: NF13922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13922_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 16991442 - 16991202
Alignment:
| Q |
10 |
agatgaaccaaatggctcaaatcatggagtgcatgaagaaggaagtggtggccttgatcttagcttgaagctttgagtttgaattttgcataagaactat |
109 |
Q |
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| T |
16991442 |
agatgaaccaaatggctcaaatcatggagtgcatgaagaaggaagtggtggccttgatcttagcttgaagctttgagtttgaattttgcataagaactat |
16991343 |
T |
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| Q |
110 |
ttcttaaagtatgatttggtttttcaaattcttaaaggcatttgtttatttatccattttcgtttctaagctattgatnnnnnnnttatagtggatataa |
209 |
Q |
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| T |
16991342 |
ttcttaaagtatgatttggtttttcaaattcttaaaggcatttgtttatttatccattttcgtttctaagctattgataaaaaaattatagtggatataa |
16991243 |
T |
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| Q |
210 |
tggatagcaaaatgacaatacactaatttatactcatgtac |
250 |
Q |
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| T |
16991242 |
tggatagcaaaatgacaatacactaatttatacttatgtac |
16991202 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 4526421 - 4526335
Alignment:
| Q |
26 |
tcaaatcatggagtgcatgaagaaggaagtggtggccttgatcttagcttgaagctttgagtttga-attttgcataagaactattt |
111 |
Q |
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| T |
4526421 |
tcaaatcttggaggacttgaaggaggaggaggtggccttgatcttagcttgaagctctaagtttgatattttgcataagaacaattt |
4526335 |
T |
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