View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13922_high_16 (Length: 254)
Name: NF13922_high_16
Description: NF13922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13922_high_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 42667639 - 42667386
Alignment:
| Q |
1 |
aagaagaaaaagaagcagaagaaagcatcaaggacattgaagtacacacgtctttgaaaggaaagaacaagaagaagcaaggatcagaaacgcatcaatc |
100 |
Q |
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| T |
42667639 |
aagaagaaaaagaagaagaagaaagcatcaaggacattgaagtacacacgtctttgaaaggaaagaacaagaagaagcaaggatcagaaacgcatcaatc |
42667540 |
T |
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| Q |
101 |
tgaaaagattgagaaaacaaaaaataacactgctgcagagagaaagaataaaaagttaattgtaacgaaggatgagaaaatgcaacaatctttgaaagga |
200 |
Q |
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| T |
42667539 |
tgaaaagattgagaaaacaaaaaataacactgctgcagagagaaagaataaaaagttaattgtaacgaaggatgagaaaatgcaacaatctttgaaagga |
42667440 |
T |
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| Q |
201 |
aagaagaagcatagacataaaagcgttgaacattttcagagcattctgaattct |
254 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||| | |||||| |
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| T |
42667439 |
aagaagaagcatagacataaaagcgttgaaaattttcagaacattataaattct |
42667386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 42667304 - 42667251
Alignment:
| Q |
201 |
aagaagaagcatagacataaaagcgttgaacattttcagagcattctgaattct |
254 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42667304 |
aagaagcagcatagacataaaagcgttgaaaattttcagagcattctgaattct |
42667251 |
T |
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