View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13922_high_6 (Length: 457)

Name: NF13922_high_6
Description: NF13922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13922_high_6
NF13922_high_6
[»] chr1 (7 HSPs)
chr1 (19-349)||(31077932-31078262)
chr1 (19-344)||(31131963-31132288)
chr1 (57-344)||(31127255-31127542)
chr1 (377-447)||(31077834-31077904)
chr1 (377-425)||(31128854-31128902)
chr1 (377-437)||(31127162-31127222)
chr1 (377-438)||(31131869-31131930)


Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 31078262 - 31077932
Alignment:
Q  19 ccatctggcaaaacatcatcgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaacca 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31078262 ccatctggcaaaacatcattgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaacca 31078163  T
Q  119 tatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtaaccaaaagaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31078162 tatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtagccaaaagaa 31078063  T
Q  219 ccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31078062 ccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaac 31077963  T
Q  319 cgcgataaaagatcaactgattccaaagttg 349  Q
    |||||||||||||||||||||||||||||||    
T  31077962 cgcgataaaagatcaactgattccaaagttg 31077932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 31132288 - 31131963
Alignment:
Q  19 ccatctggcaaaacatcatcgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaacca 118  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||| ||||||||| |  | ||||||||||||||||||||| |||||||| |||||||    
T  31132288 ccatctggcaaaacatcatcgtaggctgcttccttagcatccactgaaactggagggtccattctcatactctcgcataacgatgcatgagtgtaaacca 31132189  T
Q  119 tatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtaaccaaaagaa 218  Q
    ||| |||||||||||||| |||||||||   ||||||||  ||||||||||| ||||| |||||||| ||||||||||||||||||| |||| |||||||    
T  31132188 tattcttcacctcatcgttactaactatcattgattttctagtaatctctttaagaatctcattctctacatgactatgcttagagattaacaaaaagaa 31132089  T
Q  219 ccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaac 318  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||     
T  31132088 ccacgtgagtgcagctgaagttgtatctctcccagcaagaataaagcttatcacaatatcaactacaaaagattcgtccgaatgaccagaacttaaaaat 31131989  T
Q  319 cgcgataaaagatcaactgattccaa 344  Q
    ||||| |||| ||| || ||||||||    
T  31131988 cgcgacaaaatatccaccgattccaa 31131963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 57 - 344
Target Start/End: Complemental strand, 31127542 - 31127255
Alignment:
Q  57 atccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaaccatatccttcacctcatcgtaactaactatttctgatttt 156  Q
    |||||| ||||| |||||||| |||||||||||||| ||||| | ||||||||| |||||||||||||||||||||| |||| ||||  |||| ||||||    
T  31127542 atccacgggaaccggaggatacagtctcatactctcacataaagccgcatgagtgtaaaccatatccttcacctcattgtaattaaccgtttccgatttt 31127443  T
Q  157 ccggtaatctctttgagaatttcattctccacatgactatgcttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaa 256  Q
    ||  |||  || || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  31127442 cccataacttcctttagaatctcattctccacatgactatgcttagagagtaaccaaaagaaccaagtgagtgcagctgaagttgtatctctcccagcaa 31127343  T
Q  257 gaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaa 344  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| || |||| || ||| | |||||||||    
T  31127342 gaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaatgattccaa 31127255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 377 - 447
Target Start/End: Complemental strand, 31077904 - 31077834
Alignment:
Q  377 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatccctatg 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31077904 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatccctatg 31077834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 425
Target Start/End: Complemental strand, 31128902 - 31128854
Alignment:
Q  377 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttcttt 425  Q
    |||||||||||||||| || ||||||||||||||| |||||||||||||    
T  31128902 ccctaacgattcttgtggcgagtcctcttacttcaacgacggcttcttt 31128854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 437
Target Start/End: Complemental strand, 31127222 - 31127162
Alignment:
Q  377 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctc 437  Q
    |||||||||||||||| || |||||||||||||||||  | |||||||| || ||||||||    
T  31127222 ccctaacgattcttgtggcgagtcctcttacttcagcagcagcttcttttaaccgtcgctc 31127162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 438
Target Start/End: Complemental strand, 31131930 - 31131869
Alignment:
Q  377 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcg 438  Q
    ||||||| ||| |||| || || || |||||||||||||| ||||||||||| |||||||||    
T  31131930 ccctaacaatttttgtggcgagcccccttacttcagcgacagcttctttcaaccgtcgctcg 31131869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University