View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13922_low_1 (Length: 679)

Name: NF13922_low_1
Description: NF13922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13922_low_1
NF13922_low_1
[»] chr7 (5 HSPs)
chr7 (18-673)||(41169923-41170578)
chr7 (583-646)||(18793691-18793754)
chr7 (583-646)||(38566666-38566729)
chr7 (588-646)||(28249007-28249065)
chr7 (585-649)||(42766594-42766658)
[»] chr2 (4 HSPs)
chr2 (582-645)||(12677789-12677852)
chr2 (588-643)||(5712549-5712604)
chr2 (588-649)||(32700658-32700719)
chr2 (599-648)||(36758172-36758221)
[»] chr5 (6 HSPs)
chr5 (586-646)||(4385959-4386019)
chr5 (583-646)||(15577878-15577942)
chr5 (582-648)||(36439961-36440027)
chr5 (583-649)||(42108563-42108629)
chr5 (583-646)||(817841-817903)
chr5 (588-644)||(22859673-22859729)
[»] chr4 (2 HSPs)
chr4 (582-646)||(32526429-32526493)
chr4 (583-649)||(11432451-11432517)
[»] chr1 (5 HSPs)
chr1 (585-648)||(6213098-6213161)
chr1 (585-647)||(9230794-9230857)
chr1 (586-645)||(42323459-42323518)
chr1 (585-643)||(35879675-35879733)
chr1 (588-649)||(22863292-22863353)
[»] chr6 (1 HSPs)
chr6 (591-648)||(33614576-33614633)
[»] chr3 (2 HSPs)
chr3 (583-646)||(31133027-31133090)
chr3 (582-647)||(33458621-33458686)


Alignment Details
Target: chr7 (Bit Score: 624; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 18 - 673
Target Start/End: Original strand, 41169923 - 41170578
Alignment:
Q  18 aattgctgttgtagtgattaatagatcaaagaaatttctttgcacatcatacattctagtcttaataattatggtagaactacaatactgagggcttctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41169923 aattgctgttgtagtgattaatagatcaaagaaatttctttgcacatcatacattctagtcttaataattatggtagaactacaatactgagggcttctt 41170022  T
Q  118 aaatctgttatttgagttggttctgcctgtccatattggctttactgttacgaaaataatgaggggaaggaaaatatggagtttacaccagaagatataa 217  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41170023 aaatctgttattcgagttggttctgcctgtccatattggctttactgttacgaaaataatgaggggaaggaaaatatggagtttacaccagaagatataa 41170122  T
Q  218 aaatagagttagacaggaagcttgacatttggtagggatagttgggggaatgttgattaatagacagtgcatgagggagacctttggaagaggattttgt 317  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  41170123 aaatagagttagacaggaagcttgacatttagtagggatagttgggggaatgttgattaatagacagtgcatgagggagacctttgggggaggattttgt 41170222  T
Q  318 ctccttgattacgtgataaaagaaacattattttcttacttaccatgtctctttaagtttattaccattctctgtctctgagtttattactacactgtct 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41170223 ctccttgattacgtgataaaagaaacattattttcttacttaccatgtctctttaagtttattaccattctctgtctctgagtttattactacactatct 41170322  T
Q  418 tattttgatctaacaaagcataaactgacttaccacttaccacactgatcgagaagtcgatgttaggtctgatgtgtaccaaataaactagttttgtatt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41170323 tattttgatctaacaaagcataaactgacttaccacttaccacactgatcgagaagtcgatgttaggtctgatgtgtaccaaataaactagttttgtatt 41170422  T
Q  518 agggtctccaaagttatcggcaagaaaactagaaatgaaatatgatgtaatatataatcaaaatatcaaattctctaaaaattcatgttatatatcaaga 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  41170423 agggtctccaaagttatcggcaagaaaactagaaatgaaatatgatgtaatatataatcaaaatatcaaattctctaaaaattcatgttaaatatcaaaa 41170522  T
Q  618 aagagtttaatctcgttgatctattagttcgcatattcccacacctagtataatct 673  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41170523 aagagtttaatctcgttgatctattagttcgcatattcccacacctagtttaatct 41170578  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 583 - 646
Target Start/End: Complemental strand, 18793754 - 18793691
Alignment:
Q  583 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 646  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||||| | ||||||||||||||    
T  18793754 tcaaattctctaaaaattcatgttaaatatcaaaagagagtttaatcgcattgatctattagtt 18793691  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 583 - 646
Target Start/End: Complemental strand, 38566729 - 38566666
Alignment:
Q  583 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 646  Q
    |||| ||||| ||||||||||||||  |||||| | ||||||||||||| ||||||||||||||    
T  38566729 tcaagttctccaaaaattcatgttaagtatcaaaagagagtttaatctcattgatctattagtt 38566666  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 588 - 646
Target Start/End: Original strand, 28249007 - 28249065
Alignment:
Q  588 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 646  Q
    |||| |||||| |||||||| ||||||| ||||||||||||||  ||||||||||||||    
T  28249007 ttctttaaaaactcatgttaaatatcaaaaaagagtttaatctaattgatctattagtt 28249065  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 585 - 649
Target Start/End: Original strand, 42766594 - 42766658
Alignment:
Q  585 aaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 649  Q
    ||||||| ||||||||||||||| |||||||   |||| |||||||| ||||| || ||||||||    
T  42766594 aaattctttaaaaattcatgttaaatatcaaaggagagattaatctcattgatataatagttcgc 42766658  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 582 - 645
Target Start/End: Original strand, 12677789 - 12677852
Alignment:
Q  582 atcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagt 645  Q
    |||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||    
T  12677789 atcaaattctttaaaaattcatgttaaatatcaaaaaaaagtttaatctcgttgatatattagt 12677852  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 643
Target Start/End: Original strand, 5712549 - 5712604
Alignment:
Q  588 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctatta 643  Q
    |||||||||| ||||||||| ||||||| | |||||||||| || |||||||||||    
T  5712549 ttctctaaaacttcatgttaaatatcaaaagagagtttaatatcattgatctatta 5712604  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 649
Target Start/End: Complemental strand, 32700719 - 32700658
Alignment:
Q  588 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 649  Q
    |||||||||| ||||||||| ||||| | | |||||||||| || ||||| |||||||||||    
T  32700719 ttctctaaaacttcatgttaaatatcgaaagagagtttaatatcattgatttattagttcgc 32700658  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 648
Target Start/End: Complemental strand, 36758221 - 36758172
Alignment:
Q  599 ttcatgttatatatcaagaaagagtttaatctcgttgatctattagttcg 648  Q
    ||||||||| ||||||| | |||||||||| || ||||||||||||||||    
T  36758221 ttcatgttaaatatcaaaagagagtttaatatcattgatctattagttcg 36758172  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 586 - 646
Target Start/End: Original strand, 4385959 - 4386019
Alignment:
Q  586 aattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 646  Q
    ||||||||||| | |||||||| |||||||||||||||||||| || ||||||||||||||    
T  4385959 aattctctaaataatcatgttaaatatcaagaaagagtttaatatcattgatctattagtt 4386019  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 646
Target Start/End: Complemental strand, 15577942 - 15577878
Alignment:
Q  583 tcaaattctctaaaaattcatgttatatatcaagaaa-gagtttaatctcgttgatctattagtt 646  Q
    ||||||||||||||||||||||||| |||| || ||| ||||||||||| |||||  ||||||||    
T  15577942 tcaaattctctaaaaattcatgttaaatataaaaaaaggagtttaatcttgttgagttattagtt 15577878  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 648
Target Start/End: Complemental strand, 36440027 - 36439961
Alignment:
Q  582 atcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcg 648  Q
    ||||||||||||||||| |||||||   |||||| | ||||||||||||  ||||| ||||||||||    
T  36440027 atcaaattctctaaaaagtcatgttgattatcaaaagagagtttaatctatttgatatattagttcg 36439961  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 649
Target Start/End: Complemental strand, 42108629 - 42108563
Alignment:
Q  583 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 649  Q
    |||||||| |||||||||||||||   |||||| | ||||||||||||  ||||| |||||||||||    
T  42108629 tcaaattccctaaaaattcatgttgattatcaaaagagagtttaatctaattgatatattagttcgc 42108563  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 646
Target Start/End: Original strand, 817841 - 817903
Alignment:
Q  583 tcaaattctctaaaaat-tcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 646  Q
    ||||||||||||||||  |||||||| |||||||||  |||||||||||| |||||| |||||||    
T  817841 tcaaattctctaaaaaaatcatgttaaatatcaaga--gagtttaatctcattgatccattagtt 817903  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 644
Target Start/End: Original strand, 22859673 - 22859729
Alignment:
Q  588 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattag 644  Q
    |||||||||| ||||| ||| ||||||| | |||||||||| || ||||||||||||    
T  22859673 ttctctaaaacttcatattaaatatcaaaagagagtttaatatcattgatctattag 22859729  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 646
Target Start/End: Complemental strand, 32526493 - 32526429
Alignment:
Q  582 atcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 646  Q
    |||||||||||||||||||||||||| ||||||| |  |||||||||||  ||||| ||||||||    
T  32526493 atcaaattctctaaaaattcatgttaaatatcaaaagcgagtttaatcttattgatttattagtt 32526429  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 649
Target Start/End: Original strand, 11432451 - 11432517
Alignment:
Q  583 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 649  Q
    ||||||||||||||||||||||||   |||||| | |||||||||| |  ||||| |||||||||||    
T  11432451 tcaaattctctaaaaattcatgttgattatcaaaagagagtttaatttaattgatatattagttcgc 11432517  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 585 - 648
Target Start/End: Original strand, 6213098 - 6213161
Alignment:
Q  585 aaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcg 648  Q
    ||||||||||||||||||||||| |||| || || ||||||| |||  ||||||||||||||||    
T  6213098 aaattctctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcg 6213161  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 647
Target Start/End: Complemental strand, 9230857 - 9230794
Alignment:
Q  585 aaattctctaaaaattcatgttata-tatcaagaaagagtttaatctcgttgatctattagttc 647  Q
    ||||||||||||||||||||||| | |||||| | || |||||||||| || ||||||||||||    
T  9230857 aaattctctaaaaattcatgttaaattatcaaaagagggtttaatctcattaatctattagttc 9230794  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 645
Target Start/End: Complemental strand, 42323518 - 42323459
Alignment:
Q  586 aattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagt 645  Q
    ||||||||| ||| |||||||| ||||||| | ||| ||||||||| |||||||||||||    
T  42323518 aattctctataaaatcatgttaaatatcaaaagagaatttaatctcattgatctattagt 42323459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 585 - 643
Target Start/End: Complemental strand, 35879733 - 35879675
Alignment:
Q  585 aaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctatta 643  Q
    |||||||||||||  |||||||| ||||||| || |||||||||||| ||| |||||||    
T  35879733 aaattctctaaaatgtcatgttaaatatcaaaaaggagtttaatctcattgctctatta 35879675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 649
Target Start/End: Complemental strand, 22863353 - 22863292
Alignment:
Q  588 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 649  Q
    |||||||||| |||| |||| ||||| | | |||||||||| || |||||||||||||||||    
T  22863353 ttctctaaaacttcaggttaaatatcgaaagagagtttaatatcattgatctattagttcgc 22863292  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 648
Target Start/End: Complemental strand, 33614633 - 33614576
Alignment:
Q  591 tctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcg 648  Q
    ||||||||||||||||| ||||||| | |||||| |||||| ||||| ||||||||||    
T  33614633 tctaaaaattcatgttaaatatcaaaagagagttcaatctcattgatatattagttcg 33614576  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 646
Target Start/End: Complemental strand, 31133090 - 31133027
Alignment:
Q  583 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 646  Q
    |||| |||| ||||||||||||||| |||  || | ||||||||||||| ||||||||||||||    
T  31133090 tcaagttctataaaaattcatgttaaatacaaaaagagagtttaatctcattgatctattagtt 31133027  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 582 - 647
Target Start/End: Original strand, 33458621 - 33458686
Alignment:
Q  582 atcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttc 647  Q
    ||||| ||||||| |||||||||||| ||| ||| | | |||||||| |||||||| |||||||||    
T  33458621 atcaagttctctataaattcatgttaaataccaaaagaaagtttaatttcgttgatatattagttc 33458686  T

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