View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13922_low_11 (Length: 324)
Name: NF13922_low_11
Description: NF13922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13922_low_11 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 4633764 - 4634089
Alignment:
| Q |
13 |
aaacacatccaattactatgccacatttttatatctatttagaaaatgtgcaactgcagcctataaaaacatatcaacatca-------------aaaca |
99 |
Q |
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| T |
4633764 |
aaacaaatccaattacgatgccacatttttatatctatttagaaaatgtgcaactgcagcctataaaaacagatcaacatcaaactcaacaatcaaaaca |
4633863 |
T |
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| Q |
100 |
aaagcatcagttagtgctttcattcctttctgtacattgcacctacaaaagcatcagtcacttatggtgttcaagttaaatgccaaccatcttatatgcc |
199 |
Q |
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| T |
4633864 |
aaagcatcaattagtgattttattcatttctgtacattgcacctacaaaagcatcagtcacttctggtgttcaagttaaatgccaaccatcttatatgcc |
4633963 |
T |
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| Q |
200 |
tagtcatactttctattcacgcagttcaataatagacatcaactatggtttttgagccggcagcggtacttagcctaattgtttacatcaaaacatgaca |
299 |
Q |
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| T |
4633964 |
tagtcatactttctattcacgcagttcaataatagacatcaactatggtttttgagccggcagcgctacttagcctaattgtttacatcaaaacatgaca |
4634063 |
T |
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| Q |
300 |
gtagaatttgt-atgctcatcaaatc |
324 |
Q |
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| T |
4634064 |
gtagaatttgtaatgctcatcaaatc |
4634089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 91 - 324
Target Start/End: Original strand, 660190 - 660424
Alignment:
| Q |
91 |
atcaaaacaaaagcatcagttagtgctttcattcctttctgtacattgcacctacaaaagcatcagtca----cttatggtgttcaagttaaatgccaac |
186 |
Q |
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| T |
660190 |
atcaaaacaaaagcatcagtcagtgcttacattcatttttgtacattgcgcttacaaaaggatcggtcattcacttatagtgttcaagt-aaatgccaag |
660288 |
T |
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| Q |
187 |
catcttatatgcctagtcatactttctattcacgcagttcaataatagacatcaactatggtttttgagccggcagcggtacttagcctaattgtttaca |
286 |
Q |
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| T |
660289 |
cattttatatgc--agtcatagattagattcacgcagttcaataatgaacatcaaccatggtttttgagccggcagcgctacttagcctaattgtttaca |
660386 |
T |
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| Q |
287 |
tcaaaacatgacagtagaatttgtatgctcatcaaatc |
324 |
Q |
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| T |
660387 |
acaaaacatgacagtagaatttgtatgctcatcaaatc |
660424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 89
Target Start/End: Original strand, 660140 - 660175
Alignment:
| Q |
54 |
gaaaatgtgcaactgcagcctataaaaacatatcaa |
89 |
Q |
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| T |
660140 |
gaaaatgtgcaactgcagcctataaaaacagatcaa |
660175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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