View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13922_low_18 (Length: 244)
Name: NF13922_low_18
Description: NF13922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13922_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 34274917 - 34275155
Alignment:
| Q |
1 |
aactgagtattcaagttcgtttgctgataccatctctgatgctgaaaatggttcagaagggaatggcgatgaagtgcagtctgagctctttggtgagaat |
100 |
Q |
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| T |
34274917 |
aactgagtattcaagttcgtttgctgataccatctctgatgctgaaaatggttcagaagggaatggcgatgaagtgcagtctgagctctttggtgagaat |
34275016 |
T |
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| Q |
101 |
ggcatggcatgcccccaggatccatttggtcctgacgtcccaacaaggtgat----tttactcaaaatcagttaattttgtatcatcttgctaatgaaaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34275017 |
ggcatggcatgcccccaggatccatttggtcctgacgtcccaacaaggtgatttaatttactcaaaatcagttaattttgtatcatcttgctaatgaaaa |
34275116 |
T |
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| Q |
197 |
tgttgagtaagaaaggaggttatgtctttgcaagtcctt |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
34275117 |
tgttgagtaagaaaggaggttatgtctttgcaagtcctt |
34275155 |
T |
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