View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13922_low_2 (Length: 615)

Name: NF13922_low_2
Description: NF13922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13922_low_2
NF13922_low_2
[»] chr8 (8 HSPs)
chr8 (22-389)||(12241973-12242323)
chr8 (416-591)||(12242351-12242526)
chr8 (505-585)||(12236500-12236581)
chr8 (103-174)||(12236272-12236343)
chr8 (98-172)||(12249673-12249747)
chr8 (100-166)||(12227879-12227942)
chr8 (166-218)||(12236439-12236491)
chr8 (82-166)||(12232910-12232991)
[»] chr7 (1 HSPs)
chr7 (82-166)||(39114541-39114622)
[»] chr6 (1 HSPs)
chr6 (226-275)||(31946831-31946880)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 389
Target Start/End: Original strand, 12241973 - 12242323
Alignment:
Q  22 gttgacttgacttatatgctatttgttgtccaaatttagaaattgttcccatagtctccaaaaattataacgtttatagtatttttctcttgacgaatac 121  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||         || |||     || ||||||||||||||||||||||||    
T  12241973 gttgacttgacttatatgctatttgttgtccaattttagaaatggttcccata---------aaatat-----ttgtagtatttttctcttgacgaatac 12242058  T
Q  122 ttgattgtctcttaagaaggggtcaaccattgtgtttccaaggaacaaggggacttcttgatttttattacaaaaatcatccaaaattgatcaaagttta 221  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12242059 ttgattgtctgttaagaaggggtcaaccattgtgtttccaaggaacaaggggacttcttgatttttattacaaaaatcatccaaaattgatcaaagttta 12242158  T
Q  222 tagtaatatattagtgcgaatgcaaatcaaaagggaaattcttattcaacagtattgaatttaataataataaaaacataccacacgtaaattacattac 321  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  12242159 ta---atatattagtgcgaatgcaaatcaaaagggaaattcttattcaacagtattggatttaataataattaaaacataccacacgtaaattacattac 12242255  T
Q  322 atgttggttaaattcaataaaatttgacaatgaatttacacatatgggttagaccccaacttgtaata 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12242256 atgttggttaaattcaataaaatttgacaatgaatttacacatatgggttagaccccaacttgtaata 12242323  T

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Target: chr8; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 416 - 591
Target Start/End: Original strand, 12242351 - 12242526
Alignment:
Q  416 ttggaacgggaaattctcacacacataaacaaagggaatgttaaaaagtggagaaatgtttcgtacacagtaacattttaatgtcagatttgtatttaaa 515  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  12242351 ttggaacggaaaattctcacacacataaacaaagggaatgttaaaaagtggagaaatgtttcgcacacagtaacattttactgtcagatttgtatttaaa 12242450  T
Q  516 aagaaaaccaatagtaattaattgtaatttaagtttgaatttagagtttcttaaatatttacacataaatctctct 591  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12242451 aagacaaccaatagtaattaattgtaatttaagtttgaatttagagtttcttaaatatttacacataaatctctct 12242526  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 505 - 585
Target Start/End: Original strand, 12236500 - 12236581
Alignment:
Q  505 ttgtatttaaaaagaaaaccaatagtaattaattgtaa-tttaagtttgaatttagagtttcttaaatatttacacataaat 585  Q
    |||||||||||| || ||||  |||||||||||||||| |||||||||||||||||| |||||||||||||||  |||||||    
T  12236500 ttgtatttaaaacgacaaccggtagtaattaattgtaactttaagtttgaatttagaatttcttaaatatttatgcataaat 12236581  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 12236272 - 12236343
Alignment:
Q  103 tttttctcttgacgaatacttgattgtctcttaagaaggggtcaaccattgtgtttccaaggaacaagggga 174  Q
    |||||||||||||| || | ||||||||||||||||| ||||||||||||  |||||| |||||||||||||    
T  12236272 tttttctcttgacgcatccctgattgtctcttaagaatgggtcaaccattaagtttcccaggaacaagggga 12236343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 12249673 - 12249747
Alignment:
Q  98 tagtatttttctcttgacgaatacttgattgtctcttaagaaggggtcaaccattgtgtttccaaggaacaaggg 172  Q
    |||||| ||||||||||||| | | | |||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  12249673 tagtatgtttctcttgacgatttcctaattgtctcctaataaggggtcaaccactgtgtttccaaggaacaaggg 12249747  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 12227879 - 12227942
Alignment:
Q  100 gtatttttctcttgacgaatacttgattgtctcttaagaaggggtcaaccattgtgtttccaaggaa 166  Q
    |||||||||||||||||||| | ||||||||||||   ||||||||||||| |||||||||||||||    
T  12227879 gtatttttctcttgacgaatccatgattgtctctt---aaggggtcaaccactgtgtttccaaggaa 12227942  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 12236439 - 12236491
Alignment:
Q  166 acaaggggacttcttgatttttattacaaaaatcatccaaaattgatcaaagt 218  Q
    ||||||| |||||||||||||||| |||||||||||||||| |||||||||||    
T  12236439 acaagggaacttcttgatttttataacaaaaatcatccaaagttgatcaaagt 12236491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 12232910 - 12232991
Alignment:
Q  82 aaaattataacgtttatagtatttttctcttgacgaatacttgattgtctcttaagaaggggtcaaccattgtgtttccaaggaa 166  Q
    ||||||| ||| |||  ||||||||||||||||||||| | | ||||||||||   ||||||||||||| |||||||||||||||    
T  12232910 aaaattacaacatttccagtatttttctcttgacgaatccctaattgtctctt---aaggggtcaaccactgtgtttccaaggaa 12232991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 39114541 - 39114622
Alignment:
Q  82 aaaattataacgtttatagtatttttctcttgacgaatacttgattgtctcttaagaaggggtcaaccattgtgtttccaaggaa 166  Q
    ||||||| ||| |||  ||||||||||||||||| ||| | |||| ||||||||||   ||||||||||||||||||||||||||    
T  39114541 aaaattacaacctttccagtatttttctcttgacaaatccctgatcgtctcttaag---gggtcaaccattgtgtttccaaggaa 39114622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 31946880 - 31946831
Alignment:
Q  226 aatatattagtgcgaatgcaaatcaaaagggaaattcttattcaacagta 275  Q
    |||||||| |||| | |||||||||||||| |||||||||||||||||||    
T  31946880 aatatattggtgcaattgcaaatcaaaaggaaaattcttattcaacagta 31946831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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