View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13922_low_4 (Length: 544)
Name: NF13922_low_4
Description: NF13922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13922_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 42293766 - 42294147
Alignment:
| Q |
1 |
aaaaacgtacttgagagactccaaattgcatctttgtatcaattaacaacattgaagtttagttgtatgcaatatcttgtgaaatttggtaaaatacatg |
100 |
Q |
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| T |
42293766 |
aaaaatgtacttgagagactccaaattgcatctttgtatcaattaacaacattgaagtttagttgtatgcaatatcttgtgaaatttggcaaaatatatg |
42293865 |
T |
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| Q |
101 |
atattcagggtgatttaagttcattcttgcaaactgctgatagagatttgatatgcgaagtcttcaatgaaattcttgatgcttggaaaaagtgatatag |
200 |
Q |
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| T |
42293866 |
atattcagggtgatttaagttcattcttgcaaactgctgatagagatttgatatgcgaagtcttcaatgaaattcttgatgcttggaaaaagtgat---- |
42293961 |
T |
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| Q |
201 |
atagatcttccaaatttttaaagataggaagactagatgctactatacatagataggttgtttggttattggttgtccatgattgttttannnnnnnnct |
300 |
Q |
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| T |
42293962 |
atagatcttccaaatttttaaagataggaagactagatgctactatacatagataggttgtttggttattggttgtccatgattgtttta-tttttttct |
42294060 |
T |
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| Q |
301 |
tgatttcaatgtg------tatatatataggtaatgttctttattgggagctattcctttgtgtttagcactctaatgtgtataatt |
381 |
Q |
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| T |
42294061 |
tgatttcaatgtgtatatatatatatataggtaatgttctttattgggagctattcctttgtgtttagcactctaatgtgaataatt |
42294147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 355 - 528
Target Start/End: Original strand, 42294181 - 42294354
Alignment:
| Q |
355 |
gtgtttagcactctaatgtgtataattcctttcacaataccattatcttagtcttcttcacaacattatcccagtatgcagtatatagcattatatcaat |
454 |
Q |
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| T |
42294181 |
gtgtttagcactctaatgtgtataattcctttcacaataccattatcttagtcttcttcacaacattatcccattatgcagcatatagcattatatcaat |
42294280 |
T |
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| Q |
455 |
atgcaacactttatcgcgttctgctaacatgtgatcacggttctgagaaaaatcacatctttaaaagaacaact |
528 |
Q |
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| T |
42294281 |
atgcaacactttatcgcgttctgctaacatgtgatcacggttctgagaaaaatcacatctttaaaagaacaact |
42294354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 418
Target Start/End: Original strand, 5168939 - 5168977
Alignment:
| Q |
380 |
ttcctttcacaataccattatcttagtcttcttcacaac |
418 |
Q |
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| T |
5168939 |
ttcctttcacaataccattatcttgatcttcttcacaac |
5168977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 468
Target Start/End: Original strand, 4664924 - 4665013
Alignment:
| Q |
380 |
ttcctttcacaataccattatcttagtcttcttcacaacattatcccagtatgcagtata-tagcattatatcaatatgcaacactttat |
468 |
Q |
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| T |
4664924 |
ttcctctcactatatcattgtctcagtcttcttcacaaccttatcccttcatgcaacatattagcattatagcaatctgcaacactttat |
4665013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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