View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13922_low_5 (Length: 530)
Name: NF13922_low_5
Description: NF13922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13922_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 61 - 483
Target Start/End: Original strand, 29324334 - 29324771
Alignment:
| Q |
61 |
gtaaacaaactaaaatctatacaaatctagaaaccaaatttcatcaaactcgtaactcagttcttaccgaagttacatttcttccacatacgtgcacatt |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29324334 |
gtaaacaaactaaaatctatacaaatctagaaaccaaatttcatcaaactcgtaactcagttcttaccgaagttacatttcttccacatacgtgcacatt |
29324433 |
T |
|
| Q |
161 |
cacttccctaagtcaagtagtttatttttacatatatcatccctctttaacttgtttaatcacttgaagatgtttcagttatttatatttatatttatat |
260 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29324434 |
cacttccctaagtcaattagtttatttttacatatatcatccctctttaacttgtttaatcacttgaagatgtttcagttatttatatttatatttatat |
29324533 |
T |
|
| Q |
261 |
tcatgtttatgatgacannnnnnnaaaagcagcatctctcttcttactagctactatgcttgcgatgttgtttcagaaaggggaattgtttttgtgctat |
360 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29324534 |
tcatgtttatgatgacatttttttaaaagcagcatctctcttcttactagctactatgcttgcgatgttgtttcagaaaggggaattgtttttgtgctat |
29324633 |
T |
|
| Q |
361 |
agcactaataaagtaataggttttatataaatctaaaacgtagaagt--------------tttcttgattcatccatttactttttggcattgtttatc |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29324634 |
agcactaataaagtaataggttttatataaatctaaaacgtagaagtaccatgatctaagatttcttgattcatccatttactttttggcattgtttatc |
29324733 |
T |
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| Q |
447 |
ttgctg-aaggatacaagaattattcgccaaacattaa |
483 |
Q |
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| T |
29324734 |
ttgctgaaaggatacaagaattatccgccaaacattaa |
29324771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 29323976 - 29324020
Alignment:
| Q |
18 |
aatagtacaaaaaataatgtgtgatcattattccttttcatatgt |
62 |
Q |
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| T |
29323976 |
aatagtacaaaaaataatgtgtgatcattattccttttcatatgt |
29324020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 118 - 493
Target Start/End: Original strand, 51457114 - 51457492
Alignment:
| Q |
118 |
cagttcttaccgaagttacatttcttccacatacgtg--cacattcacttccctaagtcaagtagtttatttttacatatatcatccctctttaacttgt |
215 |
Q |
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||||||||||| ||| |||||||||||||||||| | |||| | |||||||||||||| |||||||||||| | ||||||||||||||||||||||| |
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| T |
51457114 |
cagttcttaccaaagatacatttcttccacatacctctacacactgtcttccctaagtcaattagtttatttttgcgtatatcatccctctttaacttgt |
51457213 |
T |
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| Q |
216 |
ttaatcacttgaagatgtttcagttatttatatttatatttatattcatgtttatgatgacannnnnnnaaaagcagcatctctcttcttactagctact |
315 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
51457214 |
ttaatcacttgaagatgtttcagttatttatatt------------catgtttatgatgacattttttaaaaaccagcatctctcttcttactagctact |
51457301 |
T |
|
| Q |
316 |
atgcttgcgatgttgtttcagaaaggggaattgtttttgtgctatagcactaataaagtaataggttttatataaatctaaaacgtagaagt-------- |
407 |
Q |
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||||||| |||| ||||| |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51457302 |
atgcttgaaatgt-gtttctgaaatggaaattgtttttgtgctatagcactaataaaataataggttttatataaatctaaaacgtagaagtaccatggt |
51457400 |
T |
|
| Q |
408 |
------tttcttgattcatccatttactttttggcattgtttatcttgctgaaggatacaagaattattcgccaaacattaaaacttcaata |
493 |
Q |
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| || |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
51457401 |
ctaagatgtcctgattcatccgtttactttttggcattgtttatcttgctgaatgatacaagaattgctcgccaaacattaaaacttcaata |
51457492 |
T |
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