View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13922_low_7 (Length: 427)
Name: NF13922_low_7
Description: NF13922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13922_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 19964393 - 19964000
Alignment:
| Q |
18 |
acatacaaagatggaccaacttcaaaaacctgttacaattgaagtgaaaatagtttcataatgtcagcaatataaatatatgaaaattgaaaaaatcgag |
117 |
Q |
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| T |
19964393 |
acatacaaagatggaccaacttcaaaaacctgttgcaattgaagtgaaaatagtttcataatgtcagcaatcta--tatatgaaaattgaaaaa-tcgag |
19964297 |
T |
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| Q |
118 |
attttagctctcattctcgacaagcttttatttacctctgctgtgactgagaggctatctagacttttatgagctttatcctcttgtatcactttcaact |
217 |
Q |
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| T |
19964296 |
attttagctctcattctcgacaagcttttatttacctctgctgcgactgagaggctatctagacttttatgagctttatcctcttgtatcactttcaact |
19964197 |
T |
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| Q |
218 |
gaaatttcaagttgtagatgcaatgtttagcaaaaccagtttttcaattatgattaacaaatataatcaacaattacttggtcacttacttttccatttt |
317 |
Q |
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| T |
19964196 |
gaaatttcaagttgtagatgcaatgtttagcaaaaccagtttttcaattatgattaacaaatataatcaacaattacttggtcacttacttttccatttt |
19964097 |
T |
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| Q |
318 |
tcttatgaactctaaatcccatttctattacaatgtcctcaatcttctcagtcaaatctttcggtgaatggtttgacgtaaatcttatcttcatctc |
414 |
Q |
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| T |
19964096 |
tcttatgaactttaaatcccatttctattacaatgtcctcaatcttctcagtcaaatctttcggtgaatggtttgacgtaaatcttatcttcctctc |
19964000 |
T |
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