View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13922_low_8 (Length: 401)
Name: NF13922_low_8
Description: NF13922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13922_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 9935765 - 9935398
Alignment:
| Q |
14 |
tttccatcataatcaattggattacaaccttcaaatcttcgatctcttcattgtcaatcatattaacacatgattctctcataaattacatatcttctaa |
113 |
Q |
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| T |
9935765 |
tttccatcataatcaattggattacaaccttcaaatcttcaatctcttcattgtcaatcatattaacacatgattctctcataaattacatatcttctaa |
9935666 |
T |
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| Q |
114 |
gactacgacatgattggctggaactacaagagccaagatgctaatgttgtttagtgtttgctctatcaatctctaattcctgctcatttttcattttgcc |
213 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935665 |
gactacgacatgactggctggaactacaagagctaagatgctaatgttgtttagtgtttgctctatcaatctctaattcctgctcatttttcattttgcc |
9935566 |
T |
|
| Q |
214 |
tctacaacttctgaatcatgtgaattttaattatcttcatttgttaagttttgtatgttaacattgtgctccaaatttgtatgataagttgaaattgagg |
313 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9935565 |
tctacaacttctgcatcatgtgaattttaagtatcttcatttgttaagttttgtatgttaacattgtgctccacatttgtatgataagttgaaattgagg |
9935466 |
T |
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| Q |
314 |
aacaaaatagcatgtgtactaatttgtcgacaataggttaaaacgactaggtcatgtcagattccctt |
381 |
Q |
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| T |
9935465 |
aacaaaatagcatgtgtactaattcgtcgacaataggttaaaacgactaggtcatgttagatttcctt |
9935398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 18729964 - 18729996
Alignment:
| Q |
170 |
tttgctctatcaatctctaattcctgctcattt |
202 |
Q |
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| T |
18729964 |
tttgctctatcgatctctaattcctgctcattt |
18729996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 9147632 - 9147600
Alignment:
| Q |
345 |
aataggttaaaacgactaggtcatgtcagattc |
377 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
9147632 |
aataggttaaaacgactaggtaatgtcagattc |
9147600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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