View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13923_high_21 (Length: 318)
Name: NF13923_high_21
Description: NF13923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13923_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 12933883 - 12933822
Alignment:
| Q |
59 |
tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagt |
120 |
Q |
| |
|
||||||||||||||||| |||| || ||||| || || ||||||||||||||||||||||| |
|
|
| T |
12933883 |
tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagt |
12933822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
| Q |
71 |
ggttgctccatataaatctcctcttccaaatctccatg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
36999974 |
ggttgctccatataaatctcctcttccaagtcaccatg |
36999937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 14177153 - 14177092
Alignment:
| Q |
59 |
tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagt |
120 |
Q |
| |
|
||||||||||||||||| |||| || ||||| || || ||||||||||||||||||||||| |
|
|
| T |
14177153 |
tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagt |
14177092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 28608680 - 28608783
Alignment:
| Q |
17 |
ctcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaat |
115 |
Q |
| |
|
||||| ||||||||||| |||| ||| | ||||| || || ||| ||||||||||||||| |||| || ||||| || || |||||||||||||||||| |
|
|
| T |
28608680 |
ctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaat |
28608778 |
T |
|
| Q |
116 |
gcagt |
120 |
Q |
| |
|
||||| |
|
|
| T |
28608779 |
gcagt |
28608783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
| Q |
70 |
tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt |
123 |
Q |
| |
|
|||||||||||||||| |||||| ||| ||||||||||| ||||||||| |||| |
|
|
| T |
20706234 |
tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt |
20706182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University