View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13923_high_5 (Length: 458)
Name: NF13923_high_5
Description: NF13923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13923_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 784952 - 785382
Alignment:
| Q |
1 |
ttattaatgcatcctttaccttatgaatgaacaaatgaattgaagaacataaattatttaactcagagaatacttcactttttgttgtatattgtgtttg |
100 |
Q |
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| T |
784952 |
ttattaatgtatcctttaccttatgaatgaacaactgaattgaagaacataaattatttaactcagagaatacttcactttttgttgtatattgtgtttg |
785051 |
T |
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| Q |
101 |
ctatatttgattcgcatgtccaataaaataataagcaacatattgatcatttggtgcactaatgaataaattaattacatgatccttgttcctagccaat |
200 |
Q |
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| T |
785052 |
ctatacttgattagcatttcccataaaataataaccaacattttgatcatttggtgcactaatgaataaattaattacatgatccttgttcctagccaat |
785151 |
T |
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| Q |
201 |
gtcaaccacaactttatatcgcatctttatgcatactaattataaaggaatcagtgatctcctaatgatttgttattgtcattcaaattcaaaggaaccg |
300 |
Q |
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| T |
785152 |
gtcaaccacaactttatattgcatctttatgcatactaattataaaggaatcagtgatctcctaatgatttgttattgtcattcaaattcaaaggaaccg |
785251 |
T |
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| Q |
301 |
tggctttttcattctttttgtattggaaaattagaaggttccagatagtatgtgttggcaaaatcaactaagttatagcactaattaaataagtaaaaag |
400 |
Q |
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| T |
785252 |
tggctttttcattctttttgtattggaaaattagaaggttccagatagtatgtgttggcaaaatcaactaagttatagcactaattaaataagtaaaaag |
785351 |
T |
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| Q |
401 |
caacacaaaggggaagggaatgcaaataatg |
431 |
Q |
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| T |
785352 |
caacacaaaggggaagggaatgcaaataatg |
785382 |
T |
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