View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13923_high_6 (Length: 443)
Name: NF13923_high_6
Description: NF13923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13923_high_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 3745109 - 3744675
Alignment:
| Q |
9 |
gacatcatcacacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcagaattcatacgtg |
108 |
Q |
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| T |
3745109 |
gacatcatcacacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcagaattcatacgtg |
3745010 |
T |
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| Q |
109 |
ttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagagggaagaag |
208 |
Q |
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| T |
3745009 |
ttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagagggaagaag |
3744910 |
T |
|
| Q |
209 |
agaaagaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttc |
308 |
Q |
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| T |
3744909 |
agaaagaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttc |
3744810 |
T |
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| Q |
309 |
tgctgtttctcaagatggggttctgagtgttactgttcagaaattgcctcctcctcagcctaagaagcccagaaccattcaagttcagattgcttgaatt |
408 |
Q |
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| T |
3744809 |
tgctgtttgtcaagatggggttctgagtgttactgttcagaaattgcctcctcctcagcctaagaaacctagaaccattcaggttcaggttgcttgaatt |
3744710 |
T |
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| Q |
409 |
tttgttttgaataatgatgtagtgtatgtgtgatg |
443 |
Q |
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| T |
3744709 |
tttgttttgaataatgatgtagtgtatgtgtgatg |
3744675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 4084453 - 4084497
Alignment:
| Q |
362 |
ctcagcctaagaagcccagaaccattcaagttcagattgcttgaa |
406 |
Q |
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| T |
4084453 |
ctcagcctaagaaacccagaactattcaggttcagattgcttgaa |
4084497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 100 - 405
Target Start/End: Complemental strand, 48303219 - 48302914
Alignment:
| Q |
100 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
199 |
Q |
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| T |
48303219 |
tcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgcttctgataagcggtgaaaggaaga |
48303120 |
T |
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| Q |
200 |
gggaagaagagaaagaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactga |
299 |
Q |
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| T |
48303119 |
gagaagaagagaaagaaggtggt---aaatatttgaagatggaaagaagggttggtaagtttatgaggaaatttgtgttaccagagaatgctgatgttga |
48303023 |
T |
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| Q |
300 |
---tgctgtttctgctgtttctcaagatggggttctgagtgttactgttcagaaattgcctcctcctcagcctaagaagcccagaaccattcaagttcag |
396 |
Q |
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| T |
48303022 |
aggtggtgtttctgctgtttgtcaagatggtgttcttactgttactgttaataagttgcctcctcctgaacctaagaagcctaaaactattcaggttaag |
48302923 |
T |
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| Q |
397 |
attgcttga |
405 |
Q |
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| T |
48302922 |
gttgcttga |
48302914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 10462162 - 10462270
Alignment:
| Q |
100 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
199 |
Q |
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|||| ||| |||| ||| ||| |||| |||||||||||||| ||||| |||||| |||| ||||||||||| ||| ||||||||| ||| |||||||||| |
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| T |
10462162 |
tcattcgtattcgagatggacttgccgggattgaaatctggtgatatcaaggttgaggttgaagatgataaagtggttgtgataaccggcgagaggaaga |
10462261 |
T |
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| Q |
200 |
gggaagaag |
208 |
Q |
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| T |
10462262 |
gggaagaag |
10462270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 85 - 208
Target Start/End: Complemental strand, 10539977 - 10539854
Alignment:
| Q |
85 |
aaggaagatcagaattcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataa |
184 |
Q |
| |
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|||||| |||| || || |||||||||| || || |||| ||| ||||||||| ||||| |||||| |||| ||||||||||| ||| ||||||||| |
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| T |
10539977 |
aaggaatatcaaaactcgtacgtgttcgagacagatatgctgggaatgaaatctgatgatatcaaggttgaggttgaagatgataatgtggttgtgataa |
10539878 |
T |
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| Q |
185 |
gcggagagaggaagagggaagaag |
208 |
Q |
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||| ||||||||||||||||||| |
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| T |
10539877 |
ccggcgagaggaagagggaagaag |
10539854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 366
Target Start/End: Original strand, 10462342 - 10462434
Alignment:
| Q |
277 |
cttcctgagaatgctaatactgatgctgtttctgctgtttctcaagatggggttctgagtgttactgttc---agaaattgcctcctcctcag |
366 |
Q |
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| T |
10462342 |
cttcctgagaatgctaatgctgatgctgtttcggctgtgtgtcgagatggggtgcttactgttactgctctcaagaaattgcctcctcctcag |
10462434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 10543543 - 10543464
Alignment:
| Q |
163 |
gatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaaagaaggtggtgcaaagtatttgagaatgga |
242 |
Q |
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| T |
10543543 |
gatgaaaatgtggttgtgataagtggagaaaggaagagggaagaagaagtagaagaaggtgttaagtatttgagaatgga |
10543464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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