View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13923_low_1 (Length: 345)
Name: NF13923_low_1
Description: NF13923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13923_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 31941575 - 31941256
Alignment:
| Q |
17 |
ctgatggagaatgttgtagacattttgaaatttgctggtgggtttctggggcgttatgctgtaggccgtctagtggccatgaattaccaagctcgaatgg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31941575 |
ctgatggagaatgttgtagacattttgaaatttgctggtgggtttctggggcgttatgctgtaggccgtctagtggccatgaattaccaagctcgaatgg |
31941476 |
T |
|
| Q |
117 |
gaatgatggctgcagggtcatatggccttcctcaatttcggatgcgtgtttttctttggggagctcttgccactgaagtaaggccattgcttatagtact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31941475 |
gaatgatggctgcagggtcatatggccttcctcaatttcggatgcgtgtttttctttggggagctcttgccactgaagtaaggccattgcttatagtact |
31941376 |
T |
|
| Q |
217 |
agttttttattttgttgtgttatttaagttactctgtaaatatttttaaatggaaggttaatgatttat-catcttttctggctgtagaaattaccgtca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |
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| T |
31941375 |
agttttttattttgttgtgttatttaagttactctgtaaatatttttaaatggaaggttaatgatttatccatcttttctgtccgtagaaattaccgtca |
31941276 |
T |
|
| Q |
316 |
tatccgttaccaactgatga |
335 |
Q |
| |
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||||||||||||||| |||| |
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| T |
31941275 |
tatccgttaccaactcatga |
31941256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 13538120 - 13537942
Alignment:
| Q |
20 |
atggagaatgttgtagacattttgaaatttgctggtgggtttctggggcgttatgctgtaggccgtctagtggccatgaattaccaagctcgaatgggaa |
119 |
Q |
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||||||||||| || |||||||||||||||| |||||||||| |||| ||||||||| |||||||||| || ||||||||||| |||||| ||||||||| |
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| T |
13538120 |
atggagaatgtggttgacattttgaaatttgttggtgggtttttgggacgttatgctttaggccgtcttgtagccatgaattatcaagctagaatgggaa |
13538021 |
T |
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| Q |
120 |
tgatggctgcagggtcatatggccttcctcaatttcggatgcgtgtttttctttggggagctcttgccactgaagtaag |
198 |
Q |
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| T |
13538020 |
tgatggctgctgggtgttatggccttccccaatttcggatgcgcgtttttctctggggagctcttcccactgaagtaag |
13537942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 9391910 - 9391597
Alignment:
| Q |
17 |
ctgatggagaatgttgtagacattttgaaatttgctggtgggtttctggggcgttatgctgtaggccgtctagtggccatgaattaccaagctcgaatgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
9391910 |
ctgatggagaatgttgtagacattttgaaatttgctggtgggtttctggggcgttatgctgtgggccgtctagtggccatgaattatcaagctcgaatgg |
9391811 |
T |
|
| Q |
117 |
gaatgatggctgcagggtcatatggccttcctcaatttcggatgcgtgtttttctttggggagctcttgccactgaagtaaggccattgcttatagtact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9391810 |
gaatgatggctgcagggtcatatggccttcctcaatttcggatgcgtgtttttctttggggagctcttgccactgaagtaaggccatttcttatagtact |
9391711 |
T |
|
| Q |
217 |
agttttttattttgttgtgttatttaagttactctgtaaatatttttaaatggaaggttaatgatttatcatcttttctggctgtagaaattaccgtcat |
316 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9391710 |
tgttttttattttgttgtgttatttaagttactctctaaatatttttaaatggaaggttaatgatttatcatcttttctgtttgtagaaattaccgtcat |
9391611 |
T |
|
| Q |
317 |
atccgttaccaact |
330 |
Q |
| |
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|||||||||||||| |
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| T |
9391610 |
atccgttaccaact |
9391597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 1339736 - 1339420
Alignment:
| Q |
17 |
ctgatggagaatgttgtagacattttgaaatttgctggtgggtttctggggcgttatgctgtaggccgtctagtggccatgaattaccaagctcgaatgg |
116 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
1339736 |
ctgatggagaatgttgttgacatcttgaaatttgccggaggatttctggggcgttatgctgtaggccgtctagtggcaatgaattaccaagctcgtatgg |
1339637 |
T |
|
| Q |
117 |
gaatgatggctgcagggtcatatggccttcctcaatttcggatgcgtgtttttctttggggagctcttgccactgaagtaaggccattgcttatagtact |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||||| |
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| T |
1339636 |
gaatgatggctgcagggtcatatggcctccctcaatttcggatgcgtgtttttctttggggagctctaactactgaagtaaggctgttgct--tagtact |
1339539 |
T |
|
| Q |
217 |
agttttttattttgttgtgttatttaagttactctgtaaatatttttaaatggaaggttaatgatttatcatcttttctggctgtagaaattaccgtcat |
316 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||| |||||||| ||||||||||||| || | |
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| T |
1339538 |
agatttttaatttgttgtgttatttaagttactctctaaatgttttaaaatggaaggctaatgatttatcgacttttctgtttgtagaaattaccctcgt |
1339439 |
T |
|
| Q |
317 |
atccgttaccaactgatga |
335 |
Q |
| |
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|||||||||||||| |||| |
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| T |
1339438 |
atccgttaccaactcatga |
1339420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 5641614 - 5641386
Alignment:
| Q |
18 |
tgatggagaatgttgtagacattttgaaatttgctggtgggtttctggggcgttatgctgtaggccgtctagtggccatgaattaccaagctcgaatggg |
117 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||| ||||||| |
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| T |
5641614 |
tgatggagaatgttgttgacatattgaaatttgctggtgggtatctggggcgttatgctgtaggacgtctagtggccatgcattatcaagctagaatggg |
5641515 |
T |
|
| Q |
118 |
aatgatggctgcagggtcatatggccttcctcaatttcggatgcgtgtttttctttggggagctcttgccactgaagtaaggccattgcttatagtacta |
217 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||||||||||||| ||||||||||||| |||||| | || |||||||||||| |||| ||||||| |
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| T |
5641514 |
aatgatggctgcggggtcgtacggccttcctcaatttcggatgcgtttttttctttggggcgctcttcctacccaagtaaggccatagcttgaagtacta |
5641415 |
T |
|
| Q |
218 |
gttttttattttgttgtgttatttaagtt |
246 |
Q |
| |
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||||||||||| |||||||| |||||| |
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|
| T |
5641414 |
aatttttattttgatgtgttatctaagtt |
5641386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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