View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13924_high_10 (Length: 343)
Name: NF13924_high_10
Description: NF13924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13924_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 161 - 342
Target Start/End: Original strand, 16791184 - 16791364
Alignment:
| Q |
161 |
gtctatggcaacttcatgtttttatgatgattttcctttcctttggtcccaactcatcgatccaagcaaaatgtcagaatgatcaatcaacatgtcatct |
260 |
Q |
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| T |
16791184 |
gtctatggcaacttcttgtttttatgatgattttcctttcctttggtcccaactcatcgatccaagcaaaatgtcagaatgatcaatc-acatgtcattt |
16791282 |
T |
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| Q |
261 |
tgtgcgagaagatgtgaaggtttctaaataagttcattgacgctacagaatcatttgaactcattcattatgataggaaaat |
342 |
Q |
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| T |
16791283 |
tgtgcgagaagatgtgaaggtttctaaataagttcattgacgctacagaatcacttgaacacattcattatgataggaaaat |
16791364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 16790982 - 16791136
Alignment:
| Q |
11 |
gcaaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataat---t |
107 |
Q |
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| T |
16790982 |
gcaaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataataaat |
16791081 |
T |
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| Q |
108 |
gtaatttaaatactttagtggcaagacttcaccttcgagaacaataaaggtcagt |
162 |
Q |
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| T |
16791082 |
gtaatttaaatactttagtggcaagacttcaccttcaagaacaataaaggtcagt |
16791136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 16792895 - 16793045
Alignment:
| Q |
12 |
caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata---attg |
108 |
Q |
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| T |
16792895 |
caaaagtggttgcaaaaaagctgcgaggctttttccatcctgtgggaacaaataattgcaagtcagaatcttgctcatgaacatgcatcaatattcaatg |
16792994 |
T |
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| Q |
109 |
taatttaaatactttagtggcaagacttcaccttcgagaacaataaaggtc |
159 |
Q |
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| T |
16792995 |
taatttaaatactttagtggcaagacttcgccttcgagaacaataaaggtc |
16793045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 16617261 - 16617353
Alignment:
| Q |
12 |
caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata |
104 |
Q |
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| T |
16617261 |
caaaggtggttgcaacaaagctgcgaggcattttccatcctgtgggaacaaatcattgcaagtcataatcttgctgatgaaaatacatcaata |
16617353 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 16629585 - 16629734
Alignment:
| Q |
12 |
caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattg |
108 |
Q |
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| T |
16629585 |
caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatt |
16629684 |
T |
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| Q |
109 |
taatttaaatactttagtggcaagacttcaccttcgagaacaataaaggt |
158 |
Q |
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| T |
16629685 |
tagttcaaacactttagtggcgagactccaccttcgggactaataaaggt |
16629734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 16638466 - 16638615
Alignment:
| Q |
12 |
caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattg |
108 |
Q |
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| T |
16638466 |
caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatt |
16638565 |
T |
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| Q |
109 |
taatttaaatactttagtggcaagacttcaccttcgagaacaataaaggt |
158 |
Q |
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|| || ||| ||||||||||| ||||| |||||||| || ||||||||| |
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| T |
16638566 |
tagttcaaacactttagtggcgagactccaccttcgggactaataaaggt |
16638615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 15110451 - 15110408
Alignment:
| Q |
13 |
aaaggtggttgcaacaaagctgcgaggcattttctatcctgtgg |
56 |
Q |
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| T |
15110451 |
aaaggtggttgcaacaaagctgcgatgcattttccatcctgtgg |
15110408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 16629277 - 16629369
Alignment:
| Q |
12 |
caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata |
104 |
Q |
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|||||| ||||| | ||||| |||| |||| ||| ||||||||| ||||||| ||||||||||| ||||||| | ||||||||||||||| |
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| T |
16629277 |
caaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata |
16629369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 16638158 - 16638250
Alignment:
| Q |
12 |
caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata |
104 |
Q |
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|||||| ||||| | ||||| |||| |||| ||| ||||||||| ||||||| ||||||||||| ||||||| | ||||||||||||||| |
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| T |
16638158 |
caaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata |
16638250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 38877741 - 38877856
Alignment:
| Q |
15 |
aggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattgtaa |
111 |
Q |
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| T |
38877741 |
aggtggttgcaacaaagctgtgaggcattttccatgctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatgtcaaatgtaa |
38877840 |
T |
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| Q |
112 |
tttaaatactttagtg |
127 |
Q |
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| T |
38877841 |
attaaacactttagtg |
38877856 |
T |
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