View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13924_high_9 (Length: 347)
Name: NF13924_high_9
Description: NF13924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13924_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 12933961 - 12933811
Alignment:
| Q |
10 |
taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc |
108 |
Q |
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| T |
12933961 |
taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc |
12933863 |
T |
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| Q |
109 |
atataaatctcctcttccaaatctccatgaagaaatgcggttttcacatcca |
160 |
Q |
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| T |
12933862 |
atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca |
12933811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 15947810 - 15947744
Alignment:
| Q |
94 |
ccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcggttttcacatcca |
160 |
Q |
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| T |
15947810 |
ccttctggttgttccatacatatattttcttccaactctccatgtagaaatgcggtattcacatcca |
15947744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
| Q |
100 |
ggttgctccatataaatctcctcttccaaatctccatg |
137 |
Q |
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| T |
36999974 |
ggttgctccatataaatctcctcttccaagtcaccatg |
36999937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
| Q |
10 |
taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc |
108 |
Q |
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| T |
14177231 |
taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc |
14177133 |
T |
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| Q |
109 |
atataaatctcctcttccaaatctccatgaagaaatgcggttttcacatcca |
160 |
Q |
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| T |
14177132 |
atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca |
14177081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 160
Target Start/End: Original strand, 28608644 - 28608794
Alignment:
| Q |
10 |
taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc |
108 |
Q |
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| T |
28608644 |
taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaacc |
28608742 |
T |
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| Q |
109 |
atataaatctcctcttccaaatctccatgaagaaatgcggttttcacatcca |
160 |
Q |
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| T |
28608743 |
atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca |
28608794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 4568491 - 4568425
Alignment:
| Q |
94 |
ccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcggttttcacatcca |
160 |
Q |
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| T |
4568491 |
ccttctggttgttgcatatagatattttcttccaactctccatgtagaaatgcggtcttcacatcca |
4568425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 2396315 - 2396354
Alignment:
| Q |
121 |
tcttccaaatctccatgaagaaatgcggttttcacatcca |
160 |
Q |
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| T |
2396315 |
tcttccaaatctccatgtagaaatgcggtcttcacatcca |
2396354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 10900157 - 10900091
Alignment:
| Q |
94 |
ccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcggttttcacatcca |
160 |
Q |
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| T |
10900157 |
ccttctggttgctgcatatagatagtttcttccaactctccatgtagaaatgcggtcttcacatcca |
10900091 |
T |
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