View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13924_low_1 (Length: 1419)

Name: NF13924_low_1
Description: NF13924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13924_low_1
NF13924_low_1
[»] chr8 (3 HSPs)
chr8 (86-435)||(12934377-12934726)
chr8 (828-1001)||(12933811-12933984)
chr8 (941-978)||(36999937-36999974)
[»] chr7 (2 HSPs)
chr7 (205-435)||(15300163-15300393)
chr7 (971-1008)||(6692086-6692123)
[»] chr4 (5 HSPs)
chr4 (205-435)||(28607996-28608227)
chr4 (205-435)||(14177647-14177877)
chr4 (828-1001)||(28608621-28608794)
chr4 (851-1001)||(14177081-14177231)
chr4 (940-993)||(20706182-20706234)
[»] chr6 (2 HSPs)
chr6 (971-1008)||(796698-796735)
chr6 (971-1008)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (971-1008)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 58; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 86 - 435
Target Start/End: Complemental strand, 12934726 - 12934377
Alignment:
Q  86 gcaatgtactctgcttcagttgttgaaagtgcaacgcacttttgcaacttagactgccatgatatagctccccctgaaaatgtaaacaaatatccagtac 185  Q
    ||||| || ||||| ||||||||||| |  || || || |||||||| ||||| ||||| |||| ||||||||||| ||| ||||||| |  ||| | |     
T  12934726 gcaatatattctgcctcagttgttgataaggctacacatttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaag 12934627  T
Q  186 tggattttctgttgtcaatgtcacctgccatatcagcatctgtatagcccttcaagattggatcagatcctccaaagcacaaacaatctcccgtggtacc 285  Q
    | || |||||    || | ||||||||||||||| |||||||| ||||| ||||| |  | ||| |||||||||||||| || || |     | | | ||    
T  12934626 tagactttctaccatccaggtcacctgccatatccgcatctgtgtagcctttcaaaagcgaatctgatcctccaaagcataagcacttattagagcttcc 12934527  T
Q  286 tctcaggtacctgagtatccacttgactgcttcccaatgttcctttccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggt 385  Q
    | |||| ||||| |  |||||||| || |||||||||||||| ||||| |||||   |||||||||||| ||||| |||||||| ||||||||||| ||     
T  12934526 tttcagatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggc 12934427  T
Q  386 ctagtacataccattgcatacatcaagcttccgactgctgaagaataagg 435  Q
    || || || ||||||||||||||||| || || |||||||| || |||||    
T  12934426 ctggtgcaaaccattgcatacatcaaactcccaactgctgaggagtaagg 12934377  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 828 - 1001
Target Start/End: Complemental strand, 12933984 - 12933811
Alignment:
Q  828 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 926  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  12933984 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 12933885  T
Q  927 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 1001  Q
    || ||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933884 ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 941 - 978
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  941 ggttgctccatataaatctcctcttccaaatctccatg 978  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr7 (Bit Score: 51; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 205 - 435
Target Start/End: Complemental strand, 15300393 - 15300163
Alignment:
Q  205 gtcacctgccatatcagcatctgtatagcccttcaagattggatcagatcctccaaagcacaaacaatctcccgtggtacctctcaggtacctgagtatc 304  Q
    ||||||||||||||| |||| ||| ||||| ||||| || | ||| |||||||||||||| || || |     | | | ||| |||| ||||| |  |||    
T  15300393 gtcacctgccatatccgcatatgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatc 15300294  T
Q  305 cacttgactgcttcccaatgttcctttccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggtctagtacataccattgcat 404  Q
    ||||| ||  ||||||||||||| ||||| |||||   |||||||||||| ||||| |||||||| ||||||||||| || || || || ||||||||||    
T  15300293 cacttcacaacttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcat 15300194  T
Q  405 acatcaagcttccgactgctgaagaataagg 435  Q
    ||||||| || || |||||||| || |||||    
T  15300193 acatcaaactcccaactgctgaggagtaagg 15300163  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 971 - 1008
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  971 tctccatgaagaaatgcagttttcacatccaactgctc 1008  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr4 (Bit Score: 48; Significance: 9e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 205 - 435
Target Start/End: Original strand, 28607996 - 28608227
Alignment:
Q  205 gtcacctgccatatcagcatctgtatagcccttcaagattggatcagatcctccaaagcacaaacaatctcccgtggtacctctcaggtacctgagtatc 304  Q
    |||||||||||||||||||||||| ||| | ||||| || | ||  |||||||||||||| || || |     | | | ||| |||| ||||| |  |||    
T  28607996 gtcacctgccatatcagcatctgtgtaggctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatc 28608095  T
Q  305 cacttgactgcttcccaatgttccttt-ccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggtctagtacataccattgca 403  Q
    ||||| || |||||||||||||| ||| || |||||   |||||||||||| ||||| |||||||| ||||||||||| || || || || |||||||||    
T  28608096 cacttcacagcttcccaatgttctttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgca 28608195  T
Q  404 tacatcaagcttccgactgctgaagaataagg 435  Q
    |||||||| || || |||||||| || |||||    
T  28608196 tacatcaaactcccaactgctgaggagtaagg 28608227  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 205 - 435
Target Start/End: Complemental strand, 14177877 - 14177647
Alignment:
Q  205 gtcacctgccatatcagcatctgtatagcccttcaagattggatcagatcctccaaagcacaaacaatctcccgtggtacctctcaggtacctgagtatc 304  Q
    ||||||||||||||| |||||||| ||||| ||||| || | ||  |||||||||||||| || || |     | | | ||| |||| ||||| |  |||    
T  14177877 gtcacctgccatatccgcatctgtgtagcctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatc 14177778  T
Q  305 cacttgactgcttcccaatgttcctttccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggtctagtacataccattgcat 404  Q
    ||||| || |||||||| ||||| ||||| |||||   |||||||||||| ||||| |||||| | ||||||||||| || || || || ||||||||||    
T  14177777 cacttcacagcttcccagtgttcttttcccggattggaaagaaacctgctaacaactccaactacatgagcaatatctggcctggtgcaaaccattgcat 14177678  T
Q  405 acatcaagcttccgactgctgaagaataagg 435  Q
    ||||||| || || |||||||| || |||||    
T  14177677 acatcaaactcccaactgctgaggagtaagg 14177647  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 828 - 1001
Target Start/End: Original strand, 28608621 - 28608794
Alignment:
Q  828 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 926  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  28608621 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 28608720  T
Q  927 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 1001  Q
    ||| |||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608721 ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 851 - 1001
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  851 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 949  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  950 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 1001  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 940 - 993
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  940 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 993  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 971 - 1008
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  971 tctccatgaagaaatgcagttttcacatccaactgctc 1008  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 971 - 1008
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  971 tctccatgaagaaatgcagttttcacatccaactgctc 1008  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 971 - 1008
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  971 tctccatgaagaaatgcagttttcacatccaactgctc 1008  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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