View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13924_low_2 (Length: 421)

Name: NF13924_low_2
Description: NF13924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13924_low_2
NF13924_low_2
[»] chr4 (31 HSPs)
chr4 (19-411)||(19230117-19230505)
chr4 (290-406)||(19239507-19239621)
chr4 (162-285)||(24343513-24343634)
chr4 (163-259)||(31243500-31243600)
chr4 (164-285)||(36635332-36635451)
chr4 (186-283)||(53381530-53381625)
chr4 (162-283)||(18513175-18513294)
chr4 (172-282)||(30982808-30982921)
chr4 (240-283)||(40784029-40784072)
chr4 (233-283)||(23292926-23292976)
chr4 (233-283)||(35161105-35161155)
chr4 (226-283)||(941307-941364)
chr4 (162-286)||(3144584-3144705)
chr4 (233-282)||(3947702-3947751)
chr4 (117-212)||(8820369-8820464)
chr4 (240-283)||(30094089-30094132)
chr4 (165-200)||(44796977-44797012)
chr4 (162-212)||(12084226-12084276)
chr4 (162-212)||(16402214-16402264)
chr4 (233-283)||(19482748-19482798)
chr4 (240-285)||(2361913-2361958)
chr4 (157-198)||(5176985-5177026)
chr4 (162-207)||(5654599-5654644)
chr4 (164-208)||(35723391-35723436)
chr4 (162-198)||(10546154-10546190)
chr4 (239-283)||(12895055-12895099)
chr4 (243-283)||(23700513-23700553)
chr4 (239-287)||(29205543-29205591)
chr4 (162-198)||(43299988-43300024)
chr4 (162-198)||(43300622-43300658)
chr4 (155-207)||(46180944-46180996)
[»] chr3 (27 HSPs)
chr3 (156-283)||(52369775-52369906)
chr3 (162-283)||(25074795-25074914)
chr3 (162-271)||(25651977-25652084)
chr3 (156-283)||(2408590-2408713)
chr3 (233-281)||(4987222-4987270)
chr3 (156-212)||(7931601-7931657)
chr3 (243-283)||(23657818-23657858)
chr3 (162-212)||(12704660-12704710)
chr3 (240-285)||(20503541-20503586)
chr3 (234-283)||(34185052-34185101)
chr3 (239-283)||(49651716-49651760)
chr3 (242-285)||(3730106-3730149)
chr3 (164-207)||(16192758-16192801)
chr3 (164-202)||(9624649-9624687)
chr3 (164-202)||(11493374-11493412)
chr3 (233-283)||(27505320-27505370)
chr3 (151-213)||(34189422-34189484)
chr3 (233-283)||(40052381-40052431)
chr3 (163-212)||(3730168-3730217)
chr3 (233-282)||(14216972-14217021)
chr3 (233-282)||(14223101-14223150)
chr3 (247-284)||(21861658-21861695)
chr3 (161-245)||(25326431-25326513)
chr3 (163-212)||(41319313-41319362)
chr3 (243-283)||(8903514-8903554)
chr3 (232-280)||(12100337-12100385)
chr3 (239-283)||(40993275-40993319)
[»] chr7 (24 HSPs)
chr7 (162-260)||(5938478-5938574)
chr7 (156-283)||(7133212-7133337)
chr7 (148-257)||(23930211-23930318)
chr7 (234-282)||(32287404-32287452)
chr7 (233-283)||(5409771-5409821)
chr7 (233-283)||(14729772-14729822)
chr7 (233-283)||(43027404-43027454)
chr7 (156-212)||(17780087-17780143)
chr7 (161-209)||(18233604-18233652)
chr7 (162-209)||(38134412-38134459)
chr7 (162-284)||(38804488-38804608)
chr7 (233-283)||(598277-598327)
chr7 (233-283)||(9778574-9778624)
chr7 (233-283)||(17852069-17852119)
chr7 (239-285)||(24339728-24339774)
chr7 (172-209)||(5835263-5835300)
chr7 (115-200)||(6028584-6028669)
chr7 (234-283)||(6490786-6490835)
chr7 (164-209)||(7328697-7328742)
chr7 (233-274)||(13770765-13770806)
chr7 (167-207)||(17307904-17307944)
chr7 (165-209)||(19930947-19930991)
chr7 (241-285)||(38630014-38630058)
chr7 (162-198)||(44172907-44172943)
[»] chr1 (33 HSPs)
chr1 (162-283)||(40747707-40747826)
chr1 (164-283)||(20157284-20157401)
chr1 (162-213)||(11634126-11634177)
chr1 (162-209)||(24176373-24176420)
chr1 (163-210)||(39101187-39101234)
chr1 (164-281)||(1486646-1486760)
chr1 (234-283)||(29144320-29144369)
chr1 (164-209)||(36878469-36878514)
chr1 (232-280)||(11634066-11634114)
chr1 (162-283)||(22794018-22794131)
chr1 (164-207)||(6427358-6427401)
chr1 (240-283)||(7918154-7918197)
chr1 (162-209)||(11412774-11412821)
chr1 (240-283)||(15765834-15765877)
chr1 (234-281)||(42359391-42359438)
chr1 (233-283)||(6427544-6427594)
chr1 (162-212)||(6936403-6936453)
chr1 (233-283)||(9828124-9828174)
chr1 (149-207)||(17425101-17425159)
chr1 (233-283)||(18471364-18471414)
chr1 (245-283)||(34741927-34741965)
chr1 (233-283)||(40917829-40917879)
chr1 (172-202)||(46914052-46914082)
chr1 (210-283)||(17408749-17408821)
chr1 (233-270)||(18190061-18190098)
chr1 (156-193)||(48785286-48785323)
chr1 (164-208)||(398772-398816)
chr1 (234-282)||(10233326-10233374)
chr1 (162-198)||(11571591-11571627)
chr1 (239-283)||(22881567-22881611)
chr1 (251-283)||(25361980-25362012)
chr1 (164-208)||(34712390-34712434)
chr1 (162-198)||(43609835-43609871)
[»] scaffold0007 (1 HSPs)
scaffold0007 (156-281)||(225199-225327)
[»] chr5 (19 HSPs)
chr5 (211-283)||(2419914-2419986)
chr5 (143-212)||(18607100-18607169)
chr5 (172-283)||(26205694-26205803)
chr5 (162-212)||(5467981-5468031)
chr5 (156-209)||(8420027-8420080)
chr5 (164-209)||(28588680-28588725)
chr5 (164-209)||(30098334-30098379)
chr5 (163-275)||(43554528-43554637)
chr5 (239-283)||(38464313-38464357)
chr5 (241-283)||(14873599-14873641)
chr5 (241-283)||(17593663-17593705)
chr5 (162-208)||(32630742-32630788)
chr5 (233-274)||(17088360-17088401)
chr5 (239-284)||(19820327-19820372)
chr5 (172-209)||(23015995-23016032)
chr5 (162-207)||(38749571-38749616)
chr5 (162-198)||(11596472-11596508)
chr5 (156-196)||(16864018-16864058)
chr5 (162-206)||(21577117-21577161)
[»] chr2 (23 HSPs)
chr2 (156-271)||(24011036-24011149)
chr2 (229-283)||(37419819-37419873)
chr2 (239-283)||(18840953-18840997)
chr2 (233-283)||(15972942-15972992)
chr2 (162-212)||(19573984-19574034)
chr2 (162-212)||(30563415-30563465)
chr2 (163-209)||(44605145-44605191)
chr2 (163-207)||(19613621-19613665)
chr2 (240-280)||(21091799-21091839)
chr2 (131-198)||(37497095-37497162)
chr2 (239-281)||(2438661-2438703)
chr2 (156-198)||(10250726-10250768)
chr2 (162-208)||(18570978-18571024)
chr2 (241-283)||(18622679-18622721)
chr2 (159-209)||(34006997-34007047)
chr2 (233-283)||(38117099-38117149)
chr2 (149-199)||(40681975-40682025)
chr2 (164-209)||(18420440-18420485)
chr2 (163-212)||(25544488-25544537)
chr2 (164-282)||(44860328-44860449)
chr2 (157-193)||(2073943-2073979)
chr2 (240-284)||(11223792-11223836)
chr2 (156-212)||(23354655-23354711)
[»] chr6 (25 HSPs)
chr6 (162-283)||(34446571-34446690)
chr6 (240-285)||(34595210-34595255)
chr6 (234-282)||(31959220-31959268)
chr6 (156-211)||(6299512-6299567)
chr6 (156-211)||(6306322-6306377)
chr6 (234-285)||(9107297-9107348)
chr6 (161-207)||(7569176-7569222)
chr6 (234-280)||(8389411-8389457)
chr6 (233-283)||(8776908-8776958)
chr6 (233-283)||(16766777-16766827)
chr6 (164-209)||(9617442-9617487)
chr6 (164-209)||(30866150-30866195)
chr6 (165-209)||(9629392-9629436)
chr6 (156-212)||(13689196-13689252)
chr6 (142-202)||(15443681-15443741)
chr6 (151-202)||(2140494-2140545)
chr6 (162-209)||(32299281-32299328)
chr6 (162-212)||(12235522-12235572)
chr6 (233-283)||(17435279-17435329)
chr6 (172-209)||(7377995-7378032)
chr6 (141-194)||(13815427-13815480)
chr6 (164-209)||(13851744-13851789)
chr6 (164-212)||(2117084-2117132)
chr6 (239-283)||(13360313-13360357)
chr6 (239-283)||(16833383-16833427)
[»] chr8 (23 HSPs)
chr8 (232-283)||(29510233-29510284)
chr8 (130-212)||(3658121-3658203)
chr8 (233-283)||(8343396-8343446)
chr8 (162-207)||(3508058-3508103)
chr8 (234-283)||(8343037-8343086)
chr8 (234-283)||(30067968-30068017)
chr8 (164-209)||(31236583-31236628)
chr8 (145-202)||(34201059-34201116)
chr8 (143-196)||(34739080-34739133)
chr8 (164-208)||(3025559-3025603)
chr8 (164-208)||(8798838-8798882)
chr8 (163-198)||(14740737-14740772)
chr8 (163-198)||(37225760-37225795)
chr8 (163-284)||(40063958-40064082)
chr8 (164-202)||(4611542-4611580)
chr8 (163-197)||(14227229-14227263)
chr8 (241-283)||(16641909-16641951)
chr8 (164-209)||(12606835-12606880)
chr8 (234-283)||(22652057-22652106)
chr8 (239-283)||(15816058-15816102)
chr8 (241-281)||(16987990-16988030)
chr8 (239-283)||(17751731-17751775)
chr8 (239-283)||(17760718-17760762)
[»] scaffold0652 (1 HSPs)
scaffold0652 (232-282)||(403-453)
[»] scaffold0003 (2 HSPs)
scaffold0003 (224-283)||(236914-236973)
scaffold0003 (233-285)||(241674-241726)
[»] scaffold0022 (1 HSPs)
scaffold0022 (162-207)||(99899-99944)
[»] scaffold0154 (1 HSPs)
scaffold0154 (239-283)||(13499-13543)
[»] scaffold0086 (1 HSPs)
scaffold0086 (211-283)||(2987-3058)
[»] scaffold0011 (1 HSPs)
scaffold0011 (163-209)||(240027-240073)
[»] scaffold0050 (1 HSPs)
scaffold0050 (164-209)||(70286-70331)
[»] scaffold0128 (1 HSPs)
scaffold0128 (234-282)||(32774-32822)
[»] scaffold0085 (1 HSPs)
scaffold0085 (156-208)||(25998-26050)


Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 19230505 - 19230117
Alignment:
Q  19 gcagtcacgttaaattattattgatatctattttgaagtatctatgttttgtttggtgtttgtgtttacgtcagtgcttgataggggctatgaagcacgg 118  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||     
T  19230505 gcagtcacgttaaattattatcgatatctattttgaagtatctatgttttgtttggtgtctctgtctacgtcagtgcttgataggggctatgaagcacga 19230406  T
Q  119 acatggacaccagacacaatacaaacaccgacacatggacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggt 218  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  19230405 acatggacaccagacacaatacaaacactgacacatggacatagataataatttgagaaaataacataattcaatgtaattataggtgtcgtgtgtcggt 19230306  T
Q  219 atcagacacggatgcgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatagataagcggcaattgagtggtgtttcaaagtttgtc 318  Q
     |||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  19230305 gtcagacacggatgcgtgttcgacaacaggacacatctaatccgaagagtgtccgtacttcatagataaggggcaattgagtggtgtttcaaagtttgt- 19230207  T
Q  319 tttctttgggttgattaaggaaacaattttgttttatgattatcagctttgagcataaaatgtggtaattcctgtgttgagtcagctcctttg 411  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19230206 ---ctttgggttgattaaggaaacaattttgttttatgattatcagctttgagcataaaatgtggtaattcctgtgttgagtcagctcctttg 19230117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 290 - 406
Target Start/End: Complemental strand, 19239621 - 19239507
Alignment:
Q  290 ggcaattgagtggtgtttcaaagtttgtctttctttgggttgattaaggaaacaa--ttttgttttatgattatcagctttgagcataaaatgtggtaat 387  Q
    ||||||||||||||||||||| ||||||||||    || ||||||| ||||| ||  | |||||||||||||||||||||||||||||||||||||||||    
T  19239621 ggcaattgagtggtgtttcaatgtttgtcttt----ggattgattatggaaaaaaaatattgttttatgattatcagctttgagcataaaatgtggtaat 19239526  T
Q  388 tcctgtgttgagtcagctc 406  Q
    |||||||||| ||||||||    
T  19239525 tcctgtgttgggtcagctc 19239507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 24343513 - 24343634
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatcc 261  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||||  |||| ||| || ||||| || |||||| |||||||||||||| |||| ||     
T  24343513 gataataatttgagaaaattacataattcagtgtaattataggtgtc--gtgtcggtgtccgacaccgacgcgtgtccgacaccgggacacgcctattct 24343610  T
Q  262 gaagagtgtccgtacttcatagat 285  Q
    || |||||||||| ||||||||||    
T  24343611 gaggagtgtccgtgcttcatagat 24343634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 259
Target Start/End: Complemental strand, 31243600 - 31243500
Alignment:
Q  163 ataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt----gttggtatcagacacggatgcgtgttcgacaccgggacacacctaa 258  Q
    |||||||| ||||||||| |||||||||| |||||| ||||||||| |||    |||||| || ||||| ||||||||||||||||| ||||||||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgttggtgtcggacaccgatgcgtgttcgacaccaggacacacctaa 31243501  T
Q  259 t 259  Q
    |    
T  31243500 t 31243500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 36635332 - 36635451
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgt-cgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatccg 262  Q
    ||||||| ||||||||| |||||||||| |||||||||| |||| ||||||   || ||||||||| |  || ||  ||||||||||||| |||||||||    
T  36635332 taataatttgagaaaatcacataattcagtgtaattatatgtgttcgtgtga--gtgtcagacacg-acacgcgtcagacaccgggacacgcctaatccg 36635428  T
Q  263 aagagtgtccgtacttcatagat 285  Q
    |||||||||||| ||||||||||    
T  36635429 aagagtgtccgtgcttcatagat 36635451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 53381625 - 53381530
Alignment:
Q  186 aattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||| |||||||||||| |||||||   ||| || ||||| || |||| | ||||||||||||||||||||||||| |||||||||| ||||||||    
T  53381625 aattcagtgtaattataggcgtcgtgtc--ggtgtcggacactgacgcgtatccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 53381530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 18513294 - 18513175
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatcc 261  Q
    ||||||||| ||||||||| ||||||||||||||||| ||| |||||  ||||| || || ||||| || | |||| ||||||| |||||| |||||||     
T  18513294 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtc-agtgtt-gtgtcggacaccgacgtgtgtccgacaccaggacacgcctaatct 18513197  T
Q  262 gaagagtgtccgtacttcatag 283  Q
    || |||||||||| ||||||||    
T  18513196 gaggagtgtccgtgcttcatag 18513175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 282
Target Start/End: Complemental strand, 30982921 - 30982808
Alignment:
Q  172 tgagaaaataacataattcaatgtaattataggtgtcgt----gtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatccgaagag 267  Q
    ||||||||| ||||| |||| |||||||||| ||||||     |||| ||| ||||||||| |  ||||| |||||||||||||| |||||||| |||||    
T  30982921 tgagaaaatcacatatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacg-acacgtgtccgacaccgggacacgcctaatccaaagag 30982823  T
Q  268 tgtccgtacttcata 282  Q
    ||||||| |||||||    
T  30982822 tgtccgtgcttcata 30982808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 40784029 - 40784072
Alignment:
Q  240 gacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||||||||||||||||||| |||||||||| ||||||||    
T  40784029 gacaccgggacacacctaatccgaggagtgtccgtgcttcatag 40784072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 23292976 - 23292926
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||||||||| |||||||||| |||||||||| ||||||||    
T  23292976 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 35161105 - 35161155
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| ||||||||| |||||||||||||||| ||||||||| ||||||||    
T  35161105 cgtgtccgacaccggaacacacctaatccgaaaagtgtccgtgcttcatag 35161155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 941307 - 941364
Alignment:
Q  226 acggatgcgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||| ||||| | |||||||||||||||||||| ||||||| ||||||||    
T  941307 acggacgcgtgtccgacatcaggacacacctaatccgaagactgtccgtgcttcatag 941364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 3144705 - 3144584
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatcc 261  Q
    ||||||||| | ||||||| | |||||| | |||||| |||||||||||||   ||| ||||||||  | |||||| | |||| | ||||||||||||||    
T  3144705 gataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtc--ggtgtcagacaccaacgcgtgtccaacac-gagacacacctaatcc 3144609  T
Q  262 gaagagtgtccgtacttcatagata 286  Q
    ||  ||||||||| |||||||||||    
T  3144608 gagaagtgtccgtgcttcatagata 3144584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 3947751 - 3947702
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcata 282  Q
    ||||| ||||||| ||||||||||||||||| |||||||||| |||||||    
T  3947751 cgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 8820369 - 8820464
Alignment:
Q  117 ggacatggacaccagacacaatacaaacaccgacacatggacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    ||||| |||||| ||| |||| |||||||| ||||| |  |||| ||||||||| ||| ||||| ||||||||||||| | | ||| |||||||||    
T  8820369 ggacacggacactagatacaacacaaacactgacacgtcaacatcgataataatttgataaaatcacataattcaatggagtcatatgtgtcgtgt 8820464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 30094089 - 30094132
Alignment:
Q  240 gacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||||||||||| ||||||||||||||||||||| || |||||    
T  30094089 gacaccgggacacgcctaatccgaagagtgtccgtgctacatag 30094132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 200
Target Start/End: Complemental strand, 44797012 - 44796977
Alignment:
Q  165 aataatgtgagaaaataacataattcaatgtaatta 200  Q
    |||||| |||||||||||||||||||||||||||||    
T  44797012 aataatttgagaaaataacataattcaatgtaatta 44796977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 12084226 - 12084276
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    ||||||||| ||||||||||  | |||||||| ||||||||||||||||||    
T  12084226 gataataatttgagaaaatagtaaaattcaatataattataggtgtcgtgt 12084276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 16402264 - 16402214
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    ||||||||| |||||||||||||| || || ||||||||||| ||||||||    
T  16402264 gataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgt 16402214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 19482748 - 19482798
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||| |||||||||||||||||| |||||| ||| ||||||||    
T  19482748 cgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 19482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 2361958 - 2361913
Alignment:
Q  240 gacaccgggacacacctaatccgaagagtgtccgtacttcatagat 285  Q
    ||||||| ||||||||||||| || |||||||||| ||||||||||    
T  2361958 gacaccgagacacacctaatctgacgagtgtccgtgcttcatagat 2361913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 5176985 - 5177026
Alignment:
Q  157 acatagataataatgtgagaaaataacataattcaatgtaat 198  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  5176985 acattgataatattttgagaaaataacataattcaatgtaat 5177026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 5654644 - 5654599
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgt 207  Q
    ||||||||| ||||||||| ||||||||||||||||| ||| ||||    
T  5654644 gataataatttgagaaaatgacataattcaatgtaatcatacgtgt 5654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 35723436 - 35723391
Alignment:
Q  164 taataatgtgagaaaata-acataattcaatgtaattataggtgtc 208  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||    
T  35723436 taataatttgagaaaatacacataattcaatgtaattatatgtgtc 35723391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 10546154 - 10546190
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaat 198  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  10546154 gataataatttgagaaaatgacataattcaatgtaat 10546190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 12895099 - 12895055
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||||||||| || |||||| |||||||||||||| ||||||||    
T  12895099 cgacaccgggatacgcctaattcgaagagtgtccgtgcttcatag 12895055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 23700513 - 23700553
Alignment:
Q  243 accgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||| |||||||||||||||| |||||| ||||||||||||    
T  23700513 accgagacacacctaatccgatgagtgttcgtacttcatag 23700553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 29205543 - 29205591
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatagataa 287  Q
    |||||| ||||||| |||||||||| |||||| ||| ||||||||||||    
T  29205543 cgacactgggacacgcctaatccgaggagtgttcgtgcttcatagataa 29205591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 43300024 - 43299988
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaat 198  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  43300024 gataataatttgagaaaattacataattcaatgtaat 43299988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 43300622 - 43300658
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaat 198  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  43300622 gataataatttgagaaaattacataattcaatgtaat 43300658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 46180996 - 46180944
Alignment:
Q  155 ggacatagataataatgtgagaaaataacataattcaatgtaattataggtgt 207  Q
    ||||| ||| |||||| |||||||||||||||||||| |||||| ||| ||||    
T  46180996 ggacacagacaataatttgagaaaataacataattcagtgtaatcatatgtgt 46180944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 156 - 283
Target Start/End: Original strand, 52369775 - 52369906
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgt----gtgttggtatcagacacggatgcgtgttcgacaccgggaca 251  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||    |||| |||||| ||||| || |||||| | |||||||||||    
T  52369775 gacatggataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtcggtatcggacaccgacgcgtgtccaacaccgggaca 52369874  T
Q  252 cacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||| ||||| |||||||||| ||||||||    
T  52369875 cacctattccgaggagtgtccgtgcttcatag 52369906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 25074795 - 25074914
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatcc 261  Q
    ||||||||| ||||||||| |||||||| | |||||| ||||| ||  ||||| ||| || |||||  | |||||| |||||| ||||||||||||||||    
T  25074795 gataataatttgagaaaatgacataattgagtgtaatcataggcgt--tgtgtcggtgtctgacaccaacgcgtgtccgacactgggacacacctaatcc 25074892  T
Q  262 gaagagtgtccgtacttcatag 283  Q
    || |||||| ||| ||||||||    
T  25074893 gaggagtgttcgtgcttcatag 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 25652084 - 25651977
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatcc 261  Q
    ||||||||| ||||||||| | |||||||| |||| ||||||||||  |||||  || |  ||||| ||  |||||||||||||| ||||||||||||||    
T  25652084 gataataatttgagaaaatgatataattcagtgtagttataggtgt--tgtgtcagtgttggacaccgacacgtgttcgacaccgagacacacctaatcc 25651987  T
Q  262 gaagagtgtc 271  Q
    ||||||||||    
T  25651986 gaagagtgtc 25651977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 283
Target Start/End: Complemental strand, 2408713 - 2408590
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacc 255  Q
    ||||| ||||| ||| ||| ||||  ||||||||||||||||||||    ||  ||||| ||  |||||||| |||||||||||||||||||||||| ||    
T  2408713 gacatcgataaaaatttgaaaaaaccacataattcaatgtaattat----gttttgtgtcggagtcagacactgatgcgtgttcgacaccgggacacgcc 2408618  T
Q  256 taatccgaagagtgtccgtacttcatag 283  Q
    |||||  | |||| ||||| ||||||||    
T  2408617 taatctaaggagtctccgtgcttcatag 2408590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 4987270 - 4987222
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcat 281  Q
    ||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  4987270 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 7931657 - 7931601
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    |||||||||| |||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  7931657 gacatagatagtaatttgagagaataacgtaattcagtgtaattataggtgtcgtgt 7931601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 23657818 - 23657858
Alignment:
Q  243 accgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  23657818 accgggacacacctaatccgaaaagtgtccgtacttcatag 23657858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 12704710 - 12704660
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    ||||||||| ||| ||||| ||||||||||||||||| |||||||||||||    
T  12704710 gataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgt 12704660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 20503541 - 20503586
Alignment:
Q  240 gacaccgggacacacctaatccgaagagtgtccgtacttcatagat 285  Q
    ||||||||||||| |||||||||| |||||||||| ||||||||||    
T  20503541 gacaccgggacacgcctaatccgaggagtgtccgtgcttcatagat 20503586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 34185101 - 34185052
Alignment:
Q  234 gtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||| |||||||||||||| |||||||||| |||||||||| ||||||||    
T  34185101 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 49651760 - 49651716
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||    
T  49651760 cgacaccgggacacacctaatccgagaagtgtccgtgcttcatag 49651716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 3730149 - 3730106
Alignment:
Q  242 caccgggacacacctaatccgaagagtgtccgtacttcatagat 285  Q
    |||||||||||||||||||||| |||||||| | ||||||||||    
T  3730149 caccgggacacacctaatccgaggagtgtccatgcttcatagat 3730106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 16192801 - 16192758
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgt 207  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||    
T  16192801 taataatttgagaaaataacataattcagtgtaattatatgtgt 16192758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 9624649 - 9624687
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattata 202  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  9624649 taataatttgagaaaatcacataattcaatgtaattata 9624687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 11493412 - 11493374
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattata 202  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  11493412 taataatgtgagaaaatcacataattcagtgtaattata 11493374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 27505320 - 27505370
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||||||||  |||||||||| |||||||||| ||||||||    
T  27505320 cgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 34189422 - 34189484
Alignment:
Q  151 acatggacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtg 213  Q
    |||| |||| |||||||||| ||||||||| ||||| |||| ||||||  |||||||||||||    
T  34189422 acatcgacacagataataatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgtgtg 34189484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 40052381 - 40052431
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||||||||| |||||||||| |||||| ||| ||||||||    
T  40052381 cgtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcatag 40052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 3730217 - 3730168
Alignment:
Q  163 ataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    |||||||| ||||| ||| |||||||||| |||||| |||||||||||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgtgt 3730168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 14216972 - 14217021
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcata 282  Q
    ||||| |||||| ||||||||||||||||||  ||||||||| |||||||    
T  14216972 cgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 14223101 - 14223150
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcata 282  Q
    ||||| |||||| ||||||||||||||||||  ||||||||| |||||||    
T  14223101 cgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14223150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 21861658 - 21861695
Alignment:
Q  247 ggacacacctaatccgaagagtgtccgtacttcataga 284  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  21861658 ggacacacctaatccgaggagtgtccgtgcttcataga 21861695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 25326431 - 25326513
Alignment:
Q  161 agataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacacc 245  Q
    |||||||||| | | ||||||| |||||| | ||||||||||| ||||  |||||||| || ||||| || ||||||||||||||    
T  25326431 agataataatttaaaaaaataatataatttagtgtaattatagatgtc--gtgttggtgtcggacaccgacgcgtgttcgacacc 25326513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 41319362 - 41319313
Alignment:
Q  163 ataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    |||||||| ||| ||||| |||||||||||||||||| || |||||||||    
T  41319362 ataataatttgaaaaaatgacataattcaatgtaattgtatgtgtcgtgt 41319313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 8903514 - 8903554
Alignment:
Q  243 accgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||||||||||||||||||| |||||| ||| ||||||||    
T  8903514 accgggacacacctaatccgaggagtgttcgtgcttcatag 8903554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 12100337 - 12100385
Alignment:
Q  232 gcgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttca 280  Q
    |||||| ||||||||||||||||||| ||||| ||||| |||| |||||    
T  12100337 gcgtgtccgacaccgggacacacctagtccgaggagtgcccgtgcttca 12100385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 40993319 - 40993275
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||||||||| |||||||||| |||||||| | ||||||||    
T  40993319 cgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 5938478 - 5938574
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatc 260  Q
    ||||||||| ||| |||||||||||||||| | |||||||||||||  ||||| ||| |||||||| ||||||||| ||||||||| ||||||||||||    
T  5938478 gataataatttgataaaataacataattcagtataattataggtgt--tgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacctaatc 5938574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 156 - 283
Target Start/End: Complemental strand, 7133337 - 7133212
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacc 255  Q
    |||| |||| ||||| ||||||||| |||||||||| |||||| |||||||  |||||| ||| || ||||| || |||||| |||||| ||||||||||    
T  7133337 gacacagatgataatttgagaaaatgacataattcagtgtaatcataggtg--gtgtgtcggtgtcggacaccgacgcgtgtccgacactgggacacacc 7133240  T
Q  256 taatccgaagagtgtccgtacttcatag 283  Q
    ||||| || ||| |||||| ||||||||    
T  7133239 taatctgaggagcgtccgtgcttcatag 7133212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 257
Target Start/End: Original strand, 23930211 - 23930318
Alignment:
Q  148 gacacatggacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgg 247  Q
    ||||||| ||||  |||| |||| ||||||||| |||||||||| |||||| ||||||||  ||||| ||| || || || ||||||||| |||||||||    
T  23930211 gacacatcgacacggatagtaatttgagaaaatgacataattcagtgtaatcataggtgt--tgtgtcggtgtcggataccgatgcgtgtccgacaccgg 23930308  T
Q  248 gacacaccta 257  Q
    || |||||||    
T  23930309 gatacaccta 23930318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 32287452 - 32287404
Alignment:
Q  234 gtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcata 282  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||||||    
T  32287452 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 5409821 - 5409771
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||||||||| |||||||||| |||||||||| ||||||||    
T  5409821 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 14729772 - 14729822
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||||||||| | |||||||| |||||||||||||||||||    
T  14729772 cgtgtccgacaccgggacacgcttaatccgaggagtgtccgtacttcatag 14729822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 43027454 - 43027404
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||||||||| |||||||||| |||||||||| ||||||||    
T  43027454 cgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 17780143 - 17780087
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    ||||| ||||||||| | ||||||| ||||||||| ||||||| |||||||||||||    
T  17780143 gacatggataataatttaagaaaatgacataattctatgtaataataggtgtcgtgt 17780087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 18233652 - 18233604
Alignment:
Q  161 agataataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||| |||| ||||||||| |||||||||| |||||||||||||||||    
T  18233652 agatagtaatttgagaaaatgacataattcagtgtaattataggtgtcg 18233604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 38134459 - 38134412
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||||| ||||||||| ||||||||||||||||| ||| ||||||    
T  38134459 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtcg 38134412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 38804608 - 38804488
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatcc 261  Q
    ||||||||| | ||||||| ||||||| ||  ||||| |||||||||  |||||||| || ||||| || | |||| |||| ||||||||  ||||||||    
T  38804608 gataataatttcagaaaatgacataatccagggtaatcataggtgtc--gtgttggtgtcggacaccgacgtgtgtccgacgccgggacatgcctaatcc 38804511  T
Q  262 gaagagtgtccgtacttcataga 284  Q
    || ||||||  || |||||||||    
T  38804510 gaggagtgtatgtgcttcataga 38804488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 598277 - 598327
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||||||||| ||||||||||  ||||||||| ||||||||    
T  598277 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 9778574 - 9778624
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||||||||| |||||||| | |||||||||| ||||||||    
T  9778574 cgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcatag 9778624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 17852069 - 17852119
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||| |||||||||||| ||| |||||||||| ||||||||    
T  17852069 cgtgtccgacaccgagacacacctaattcgaggagtgtccgtgcttcatag 17852119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 24339728 - 24339774
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatagat 285  Q
    |||||||||||||| |||||||||| ||||| |||| ||||||||||    
T  24339728 cgacaccgggacacgcctaatccgaggagtgcccgtgcttcatagat 24339774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 5835263 - 5835300
Alignment:
Q  172 tgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  5835263 tgagaaaataacataattcagtgtaattatatgtgtcg 5835300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 6028584 - 6028669
Alignment:
Q  115 acggacatggacaccagacacaatacaaacaccgacacatggacatagataataatgtgagaaaataacataattcaatgtaatta 200  Q
    ||||||| ||||| ||||||| | ||| |||| ||||||| || || | ||||||| ||| || ||||||||||| ||||||||||    
T  6028584 acggacacggacatcagacacgacacagacactgacacatcgatatggttaataatttgaaaatataacataatttaatgtaatta 6028669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 6490786 - 6490835
Alignment:
Q  234 gtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||| |||||||||||||| | |||||||| |||||||||| ||||||||    
T  6490786 gtgtccgacaccgggacacgcttaatccgaggagtgtccgtgcttcatag 6490835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 7328742 - 7328697
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||| |||||||||||||||||| | |||||||||| ||||||    
T  7328742 taataatttgagaaaataacataatttagtgtaattatatgtgtcg 7328697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 13770765 - 13770806
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgt 274  Q
    ||||| ||||||||| |||| |||||||||||||||||||||    
T  13770765 cgtgtccgacaccggaacacgcctaatccgaagagtgtccgt 13770806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 17307904 - 17307944
Alignment:
Q  167 taatgtgagaaaataacataattcaatgtaattataggtgt 207  Q
    |||| |||||||||||||||||||| |||||||||| ||||    
T  17307904 taatttgagaaaataacataattcagtgtaattatatgtgt 17307944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 19930991 - 19930947
Alignment:
Q  165 aataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    |||||| ||| ||||| ||||||||||||||||||||| ||||||    
T  19930991 aataatttgataaaatgacataattcaatgtaattatatgtgtcg 19930947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 38630014 - 38630058
Alignment:
Q  241 acaccgggacacacctaatccgaagagtgtccgtacttcatagat 285  Q
    ||||||||||||||||| | | |||||||||||| ||||||||||    
T  38630014 acaccgggacacacctagttcaaagagtgtccgtgcttcatagat 38630058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 44172943 - 44172907
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaat 198  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  44172943 gataataatttgagaaaatgacataattcaatgtaat 44172907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 40747826 - 40747707
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatcc 261  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||   ||||||| || ||||| ||| | ||| | |||| ||||||| ||||||||    
T  40747826 gataataatttgagaaaatgacataattcaatgtaattataggtgtc--atgttggtgtcggacaccgatccatgtcccacacagggacacccctaatcc 40747729  T
Q  262 gaagagtgtccgtacttcatag 283  Q
    || ||| |||||| ||||||||    
T  40747728 gaggagcgtccgtgcttcatag 40747707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 283
Target Start/End: Complemental strand, 20157401 - 20157284
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatccga 263  Q
    ||||||||||||||||| |||||||||| |||||| ||| |||||| ||| | || || ||||| || |||||| |||||||| ||||||||||||  ||    
T  20157401 taataatgtgagaaaatcacataattcagtgtaatcatatgtgtcg-gtg-tcgtgtccgacaccgacgcgtgtccgacaccgagacacacctaatttga 20157304  T
Q  264 agagtgtccgtacttcatag 283  Q
     |||| ||||| ||||||||    
T  20157303 ggagtatccgtgcttcatag 20157284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 11634177 - 11634126
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtg 213  Q
    ||||||||| |||||||| ||||||||| |||||||| ||||||||||||||    
T  11634177 gataataatttgagaaaacaacataatttaatgtaatcataggtgtcgtgtg 11634126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 24176420 - 24176373
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||||||    
T  24176420 gataataatttgagaaaataacatcattcagtgtaattataggtgtcg 24176373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 39101234 - 39101187
Alignment:
Q  163 ataataatgtgagaaaataacataattcaatgtaattataggtgtcgt 210  Q
    |||||||| |||||||||||||||||| | ||||||||||||||||||    
T  39101234 ataataatttgagaaaataacataattaagtgtaattataggtgtcgt 39101187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 1486760 - 1486646
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatccga 263  Q
    ||||||| ||| ||||| |||||||||| |||||||||| |||||| |||| | | || |||||| |  ||||| |||||||||||||| ||||||||||    
T  1486760 taataatttgaaaaaatcacataattcagtgtaattataagtgtcg-gtgtcg-tgtcggacacg-acacgtgtccgacaccgggacacgcctaatccga 1486664  T
Q  264 agagtgtccgtacttcat 281  Q
     ||||||| || ||||||    
T  1486663 ggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 29144369 - 29144320
Alignment:
Q  234 gtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||| ||||||||| |||| ||||||||||||||||||||| ||||||||    
T  29144369 gtgtccgacaccggaacacgcctaatccgaagagtgtccgtgcttcatag 29144320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 36878469 - 36878514
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  36878469 taataatttgagaaaatcacataattcagtgtaattataggtgtcg 36878514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 11634114 - 11634066
Alignment:
Q  232 gcgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttca 280  Q
    |||||| ||||||| ||||||||| |||||||||||||||||| |||||    
T  11634114 gcgtgtccgacaccaggacacaccaaatccgaagagtgtccgtgcttca 11634066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 22794131 - 22794018
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatcc 261  Q
    ||||||||| ||| ||||| ||||||| || |||||||||||||||||||        || ||||| || || ||| |||| |||||||||||||||| |    
T  22794131 gataataatttgaaaaaatgacataatacagtgtaattataggtgtcgtg--------tccgacactgacgcatgtccgactccgggacacacctaattc 22794040  T
Q  262 gaagagtgtccgtacttcatag 283  Q
    || |||||| ||| ||||||||    
T  22794039 gaggagtgtacgtgcttcatag 22794018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 6427358 - 6427401
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgt 207  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||    
T  6427358 taataatttgagaaaatcacataattcaatgtaattatatgtgt 6427401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 7918197 - 7918154
Alignment:
Q  240 gacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||| ||||||||||||||||| |||||||||| ||||||||    
T  7918197 gacaccaggacacacctaatccgaggagtgtccgtgcttcatag 7918154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 11412821 - 11412774
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||||| ||||||||| |||||||||||||| || ||||||||||    
T  11412821 gataataatatgagaaaatgacataattcaatgtgatcataggtgtcg 11412774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 15765834 - 15765877
Alignment:
Q  240 gacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||    
T  15765834 gacactgggacacgcctaatccgaagagtgtccgtgcttcatag 15765877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 42359438 - 42359391
Alignment:
Q  234 gtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcat 281  Q
    |||| |||||||||||||| |||||||||| |||||||||| ||||||    
T  42359438 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 6427544 - 6427594
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||||||||| ||||||| || |||||||||| ||||||||    
T  6427544 cgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcatag 6427594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 6936453 - 6936403
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    ||||||||| ||||||||| |||||||| | |||||| |||||||||||||    
T  6936453 gataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgt 6936403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 9828124 - 9828174
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| ||||||||||||||  ||||||||| |||||||||| ||||||||    
T  9828124 cgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 17425159 - 17425101
Alignment:
Q  149 acacatggacatagataataatgtgagaaaataacataattcaatgtaattataggtgt 207  Q
    ||||| |||||  ||||||||| ||| ||||| ||||||||||||||||||||| ||||    
T  17425159 acacacggacaccgataataatttgataaaatcacataattcaatgtaattatatgtgt 17425101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 18471364 - 18471414
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| ||||||||  ||||||||||| ||| |||||||||||||||||||    
T  18471364 cgtgtccgacaccgaaacacacctaattcgaggagtgtccgtacttcatag 18471414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 34741927 - 34741965
Alignment:
Q  245 cgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  34741927 cgggacacgcctaatccgaagagtgtccgtgcttcatag 34741965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 40917829 - 40917879
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||||||||| |||||||||| || ||||||| ||||||||    
T  40917829 cgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatag 40917879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 202
Target Start/End: Complemental strand, 46914082 - 46914052
Alignment:
Q  172 tgagaaaataacataattcaatgtaattata 202  Q
    |||||||||||||||||||||||||||||||    
T  46914082 tgagaaaataacataattcaatgtaattata 46914052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 17408749 - 17408821
Alignment:
Q  210 tgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||||||||||||| ||  ||||| |||||||  || |||||||||| |||||||||| || ||||||||    
T  17408749 tgtgttggtatcagacac-gacacgtgtccgacaccaagatacacctaatctgaagagtgtctgtgcttcatag 17408821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 18190098 - 18190061
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgt 270  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  18190098 cgtgtccgacaccgggacacacctaatccgaggagtgt 18190061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 48785323 - 48785286
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaat 193  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  48785323 gacaaagataataatttgagaaaataacataattcaat 48785286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 398816 - 398772
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtc 208  Q
    ||||||| ||| ||||| |||||||||| ||||||||||||||||    
T  398816 taataatttgaaaaaatcacataattcagtgtaattataggtgtc 398772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 10233326 - 10233374
Alignment:
Q  234 gtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcata 282  Q
    |||| ||||||| |||||||||||||| || |||||||||| |||||||    
T  10233326 gtgtccgacaccaggacacacctaatcagaggagtgtccgtgcttcata 10233374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 11571591 - 11571627
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaat 198  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  11571591 gataataatttgagaaaatgacataattcaatgtaat 11571627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 22881611 - 22881567
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||||||||||||  ||||||||| |||||||||| ||||||||    
T  22881611 cgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22881567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 25361980 - 25362012
Alignment:
Q  251 acacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||||||||||||||||||| ||||||||    
T  25361980 acacctaatccgaagagtgtccgtgcttcatag 25362012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 34712434 - 34712390
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtc 208  Q
    ||||||| |||||||||||||||||| | |||||||||| |||||    
T  34712434 taataatttgagaaaataacataatttagtgtaattatatgtgtc 34712390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 43609871 - 43609835
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaat 198  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  43609871 gataataatttgagaaaataacataattgaatgtaat 43609835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 281
Target Start/End: Complemental strand, 225327 - 225199
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt--gt-tggtatcagacacggatgcgtgttcgacaccgggacac 252  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||| |||||||||  || | || || ||||| || |||||||||||||| ||||||    
T  225327 gacacagataataatttgagaaaatgacataatacaatgtaattataagtgtcgtgttggtgtcgtgtcggacactgacgcgtgttcgacaccaggacac 225228  T
Q  253 acctaatccgaagagtgtccgtacttcat 281  Q
     |||||| ||| |||||||||| ||||||    
T  225227 gcctaattcgaggagtgtccgtgcttcat 225199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 2419914 - 2419986
Alignment:
Q  211 gtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||| |||||||| ||||||||| |||| |||||||||||||||||||| |||||||||| ||||||||    
T  2419914 gtgttggtgtcagacaccgatgcgtgtccgaccccgggacacacctaatccgatgagtgtccgtgcttcatag 2419986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 18607169 - 18607100
Alignment:
Q  143 acaccgacacatggacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    ||||||| |||  ||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  18607169 acaccgatacaccgacatggataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgt 18607100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 283
Target Start/End: Complemental strand, 26205803 - 26205694
Alignment:
Q  172 tgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatccgaagagtgtc 271  Q
    ||||||||| |||||||||| |||||| |||||||||  |||||||| || |||||  | |||| | |||||||||||||||| |||||| ||  |||||    
T  26205803 tgagaaaatgacataattcagtgtaatcataggtgtc--gtgttggtgtcggacaccaacgcgtatccgacaccgggacacacgtaatccaaaaggtgtc 26205706  T
Q  272 cgtacttcatag 283  Q
    ||| ||||||||    
T  26205705 cgtgcttcatag 26205694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 5468031 - 5467981
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    ||||||||| ||| ||||| |||||||||| ||||||||||||||||||||    
T  5468031 gataataatttgataaaatcacataattcagtgtaattataggtgtcgtgt 5467981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 8420027 - 8420080
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||||| | ||||||    
T  8420027 gacatagctaataatttgaaaaaataacataattcaatgtaattacaagtgtcg 8420080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 28588725 - 28588680
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  28588725 taataatttgagaaaatcacataattcagtgtaattataggtgtcg 28588680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 30098334 - 30098379
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||| ||||||||| |||||||||||||||||||||| |||||    
T  30098334 taataatttgagaaaatcacataattcaatgtaattatagatgtcg 30098379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 43554528 - 43554637
Alignment:
Q  163 ataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatccg 262  Q
    |||||||| ||||||||| | |||||| | |||||| |||||||||  |||| ||| || ||||| || |||||| ||||| |||||||| |||||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgtc--gtgtcggtgtcggacaccgacgcgtgtccgaca-cgggacacgcctaatccg 43554624  T
Q  263 aagagtgtccgta 275  Q
    |  ||||||||||    
T  43554625 agaagtgtccgta 43554637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 38464357 - 38464313
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||    
T  38464357 cgacaccgggacacacctaatccgaggagtgtctgtgcttcatag 38464313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 14873599 - 14873641
Alignment:
Q  241 acaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||||||| |||||||||| |||||||||| ||||||||    
T  14873599 acaccgggacacgcctaatccgaggagtgtccgtgcttcatag 14873641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 17593705 - 17593663
Alignment:
Q  241 acaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||||||| | |||||||| |||||||||||||||||||    
T  17593705 acaccgggacacgcttaatccgaggagtgtccgtacttcatag 17593663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 32630788 - 32630742
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtc 208  Q
    ||||||||| ||||||||| | ||||||||||||||||||| |||||    
T  32630788 gataataatttgagaaaattatataattcaatgtaattatatgtgtc 32630742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 17088360 - 17088401
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgt 274  Q
    ||||| |||||||||||||| |||||||||| ||||||||||    
T  17088360 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgt 17088401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 19820372 - 19820327
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcataga 284  Q
    |||||||||||||| ||||||| || |||||||||| |||||||||    
T  19820372 cgacaccgggacacgcctaatcagaggagtgtccgtgcttcataga 19820327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 23016032 - 23015995
Alignment:
Q  172 tgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  23016032 tgagaaaatcacataattcagtgtaattataggtgtcg 23015995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 38749616 - 38749571
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgt 207  Q
    ||||||||| ||| ||||| ||||||||||||||||||||| ||||    
T  38749616 gataataatttgaaaaaatgacataattcaatgtaattatatgtgt 38749571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 11596508 - 11596472
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaat 198  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  11596508 gataataatttgagaaaatgacataattcaatgtaat 11596472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 16864018 - 16864058
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgta 196  Q
    ||||| |||||||||| |||||||| |||||||||||||||    
T  16864018 gacattgataataatgcgagaaaatgacataattcaatgta 16864058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 21577161 - 21577117
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtg 206  Q
    ||||||||| |||||||||||||||||| | |||||| |||||||    
T  21577161 gataataatttgagaaaataacataattaagtgtaataataggtg 21577117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 271
Target Start/End: Original strand, 24011036 - 24011149
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacc 255  Q
    ||||| ||||||||| ||||||||| |||||||| | |||||| |||||||||| ||   ||| || || |||||||||||| |||||||  |||||||     
T  24011036 gacattgataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtc--ggtgtctgatacggatgcgtgtccgacaccaagacacaca 24011133  T
Q  256 taatccgaagagtgtc 271  Q
    ||||||||||||||||    
T  24011134 taatccgaagagtgtc 24011149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 37419819 - 37419873
Alignment:
Q  229 gatgcgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||| ||||||||    
T  37419819 gatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 18840997 - 18840953
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||    
T  18840997 cgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 15972942 - 15972992
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||| ||||||||||||||||||||||| ||||||| ||||||||    
T  15972942 cgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttcatag 15972992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 19573984 - 19574034
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    ||||||||| | |||||||||||||||||| |||||||||||||| |||||    
T  19573984 gataataatttaagaaaataacataattcagtgtaattataggtggcgtgt 19574034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 30563415 - 30563465
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||| ||||    
T  30563415 gataataatttgagaaaatgacataattcaatgtaactataggtgttgtgt 30563465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 44605191 - 44605145
Alignment:
Q  163 ataataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    |||||||| ||||||||||||||||||||||||||||| | ||||||    
T  44605191 ataataatttgagaaaataacataattcaatgtaattacatgtgtcg 44605145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 19613665 - 19613621
Alignment:
Q  163 ataataatgtgagaaaataacataattcaatgtaattataggtgt 207  Q
    |||||||| ||||||||||||||||||||||||||| ||| ||||    
T  19613665 ataataatttgagaaaataacataattcaatgtaatgatatgtgt 19613621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 21091799 - 21091839
Alignment:
Q  240 gacaccgggacacacctaatccgaagagtgtccgtacttca 280  Q
    |||||||||||||||||| |||||||||||||||| |||||    
T  21091799 gacaccgggacacacctattccgaagagtgtccgtgcttca 21091839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 37497095 - 37497162
Alignment:
Q  131 gacacaatacaaacaccgacacatggacatagataataatgtgagaaaataacataattcaatgtaat 198  Q
    ||||||| |||||||| ||||||| ||||  ||||||||| |||||||||  || |||||||||||||    
T  37497095 gacacaaaacaaacactgacacatcgacactgataataatttgagaaaatgccacaattcaatgtaat 37497162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 2438703 - 2438661
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcat 281  Q
    |||||||||||||| |||||||||| |||||||||| ||||||    
T  2438703 cgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 10250726 - 10250768
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaat 198  Q
    ||||| ||||||||| ||||||||||||| |||||||||||||    
T  10250726 gacattgataataatttgagaaaataacacaattcaatgtaat 10250768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 18570978 - 18571024
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtc 208  Q
    ||||||||| ||||||||| ||||||||||||||||| ||| |||||    
T  18570978 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 18622679 - 18622721
Alignment:
Q  241 acaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||||||||| |||||||| |||||||||| ||||||||    
T  18622679 acaccgggacacacttaatccgaggagtgtccgtgcttcatag 18622721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 34007047 - 34006997
Alignment:
Q  159 atagataataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    |||||||||||| ||||||| | |||||||||| |||||| ||||||||||    
T  34007047 atagataataatttgagaaattgacataattcagtgtaatcataggtgtcg 34006997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 38117149 - 38117099
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||||||||| |||||||||| | |||||||| ||||||||    
T  38117149 cgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatag 38117099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 40681975 - 40682025
Alignment:
Q  149 acacatggacatagataataatgtgagaaaataacataattcaatgtaatt 199  Q
    |||| ||||||  ||||||||| ||||||||| ||||||||||||||||||    
T  40681975 acacttggacaccgataataatttgagaaaatgacataattcaatgtaatt 40682025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 18420485 - 18420440
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||| ||||||||| ||||||||||||| ||||||| ||||||    
T  18420485 taataatttgagaaaatcacataattcaatgcaattataagtgtcg 18420440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 25544488 - 25544537
Alignment:
Q  163 ataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    |||||||| ||||||||| | |||||||| |||||| |||||||||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgt 25544537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 44860328 - 44860449
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcgt----gtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaat 259  Q
    ||||||| |||||||||  ||||||||| |||||||||| ||||||     |||||||| |  |||||| |   |||| ||||| |||||||||||||||    
T  44860328 taataatttgagaaaatcgcataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggacacg-acatgtgtccgacatcgggacacacctaat 44860426  T
Q  260 ccgaagagtgtccgtacttcata 282  Q
     ||| |||||||||| |||||||    
T  44860427 tcgaggagtgtccgtgcttcata 44860449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 2073943 - 2073979
Alignment:
Q  157 acatagataataatgtgagaaaataacataattcaat 193  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  2073943 acatcgataataatttgagaaaataacataattcaat 2073979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 11223836 - 11223792
Alignment:
Q  240 gacaccgggacacacctaatccgaagagtgtccgtacttcataga 284  Q
    ||||||||||||| ||||||| || |||||||||| |||||||||    
T  11223836 gacaccgggacacgcctaatctgaggagtgtccgtgcttcataga 11223792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 23354711 - 23354655
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    |||| |||||||||| ||||||||| | |||||| | |||||| |||||||||||||    
T  23354711 gacacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgt 23354655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 34446571 - 34446690
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatcc 261  Q
    ||||||||| ||||||||| |||||||||| |||||| |||||||||  |||| ||| ||  |||| || |||| |  ||||| ||||||||||||||||    
T  34446571 gataataatttgagaaaatgacataattcagtgtaatcataggtgtc--gtgtcggtgtccaacaccgacgcgtatctgacactgggacacacctaatcc 34446668  T
Q  262 gaagagtgtccgtacttcatag 283  Q
     | |||||||||| ||||||||    
T  34446669 aaggagtgtccgtgcttcatag 34446690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 34595210 - 34595255
Alignment:
Q  240 gacaccgggacacacctaatccgaagagtgtccgtacttcatagat 285  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||    
T  34595210 gacaccgggacacacctaatccgaggagtgtccgtgcttcatagat 34595255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 31959220 - 31959268
Alignment:
Q  234 gtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcata 282  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||||||    
T  31959220 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 31959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 6299512 - 6299567
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtg 211  Q
    ||||| ||||||||| ||||||||| | ||||||||||||||| ||||||||||||    
T  6299512 gacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6299567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 6306322 - 6306377
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtg 211  Q
    ||||| ||||||||| ||||||||| | ||||||||||||||| ||||||||||||    
T  6306322 gacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6306377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 9107348 - 9107297
Alignment:
Q  234 gtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatagat 285  Q
    |||| ||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  9107348 gtgtccgacaccgggacacacctaatccgaggagtgcccgtgcttcatagat 9107297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 7569222 - 7569176
Alignment:
Q  161 agataataatgtgagaaaataacataattcaatgtaattataggtgt 207  Q
    |||||||||| ||||||||| |||||||||| |||||||||||||||    
T  7569222 agataataatttgagaaaattacataattcagtgtaattataggtgt 7569176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 8389457 - 8389411
Alignment:
Q  234 gtgttcgacaccgggacacacctaatccgaagagtgtccgtacttca 280  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||||    
T  8389457 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 8389411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 8776958 - 8776908
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||| |||||||||||||||| |||||||||| ||||||||    
T  8776958 cgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcatag 8776908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 16766777 - 16766827
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||||||||| ||||||||||||| ||||||| ||||||||    
T  16766777 cgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgcttcatag 16766827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 9617442 - 9617487
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtcg 9617487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 30866195 - 30866150
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||    
T  30866195 taataatttgagaaaatcacataattcaatgtaattatatgtgtcg 30866150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 9629392 - 9629436
Alignment:
Q  165 aataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||    
T  9629392 aataatttgagaaaatcacataattcaatgtaattatatgtgtcg 9629436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 13689252 - 13689196
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    |||| |||||||||| ||||||||||||| | ||||||||||| |||||| ||||||    
T  13689252 gacacagataataatttgagaaaataacaaatttcaatgtaatcataggtatcgtgt 13689196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 15443681 - 15443741
Alignment:
Q  142 aacaccgacacatggacatagataataatgtgagaaaataacataattcaatgtaattata 202  Q
    ||||| ||||| | |||||  |||||||| |||||||||||||||||||||| ||||||||    
T  15443681 aacactgacacgtcgacatcaataataatttgagaaaataacataattcaatataattata 15443741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 2140545 - 2140494
Alignment:
Q  151 acatggacatagataataatgtgagaaaataacataattcaatgtaattata 202  Q
    |||| ||||| ||||||||| ||||||||| |||||||||||||||| ||||    
T  2140545 acatcgacattgataataatttgagaaaatgacataattcaatgtaactata 2140494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 32299281 - 32299328
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||||| ||||||||| ||||||||||||||| ||||| ||||||    
T  32299281 gataataatttgagaaaatcacataattcaatgtagttatacgtgtcg 32299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 12235572 - 12235522
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    |||||||||  |||||||| |||||||||| |||||| |||||||||||||    
T  12235572 gataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgt 12235522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 17435279 - 17435329
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||||||| |||||||  |||||| ||| ||||||||||||||||||    
T  17435279 cgtgttcgacactgggacacgtctaatctgaaaagtgtccgtacttcatag 17435329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 7377995 - 7378032
Alignment:
Q  172 tgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  7377995 tgagaaaatcacataattcaatgtaattatatgtgtcg 7378032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 13815427 - 13815480
Alignment:
Q  141 aaacaccgacacatggacatagataataatgtgagaaaataacataattcaatg 194  Q
    |||||||||||||  ||||| ||||||| | ||||||||| |||||||||||||    
T  13815427 aaacaccgacacactgacatcgataatattttgagaaaatcacataattcaatg 13815480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 13851744 - 13851789
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||| |||||||||||| ||||||| |||||||||| ||||||    
T  13851744 taataatttgagaaaataacgtaattcagtgtaattatatgtgtcg 13851789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 2117084 - 2117132
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    ||||||| ||| ||||| ||||||||||||| ||||||| |||||||||    
T  2117084 taataatttgaaaaaatcacataattcaatgcaattataagtgtcgtgt 2117132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 13360357 - 13360313
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||| | ||||| ||||||||||||||||||||| ||||||||    
T  13360357 cgacactgagacacgcctaatccgaagagtgtccgtgcttcatag 13360313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 16833383 - 16833427
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||||| ||||||||| ||||||| ||||||| |||||||||||    
T  16833383 cgacaccaggacacaccgaatccgaggagtgtctgtacttcatag 16833427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 29510284 - 29510233
Alignment:
Q  232 gcgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||| ||||||||||||||||||||||||| |||||||||| ||||||||    
T  29510284 gcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 29510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 3658121 - 3658203
Alignment:
Q  130 agacacaatacaaacaccgacacatggacatagataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgt 212  Q
    ||||||||||   |||||||||||| ||||  ||||||||| |||||||||||  || |||| |||||| |||||||||||||    
T  3658121 agacacaatatggacaccgacacatcgacacggataataatttgagaaaataatgtagttcagtgtaatcataggtgtcgtgt 3658203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 8343396 - 8343446
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| |||||||||||||| |||||||||||||||||| || ||||||||    
T  8343396 cgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 3508058 - 3508103
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgt 207  Q
    ||||||||| ||||||||||||||||||||||||||| ||| ||||    
T  3508058 gataataatttgagaaaataacataattcaatgtaatcatatgtgt 3508103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 8343037 - 8343086
Alignment:
Q  234 gtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||| |||||||||||||| |||||||||||||||||| || ||||||||    
T  8343037 gtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 30068017 - 30067968
Alignment:
Q  234 gtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||| |||||| |||||||||||||||||| |||||||||| ||||||||    
T  30068017 gtgtccgacactgggacacacctaatccgatgagtgtccgtgcttcatag 30067968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 31236628 - 31236583
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||    
T  31236628 taataatttgagaaaatcacataattcaatgtaattatatgtgtcg 31236583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 34201116 - 34201059
Alignment:
Q  145 accgacacatggacatagataataatgtgagaaaataacataattcaatgtaattata 202  Q
    |||||||||| ||||   |||||||| ||||||||| |||||||||||||||||||||    
T  34201116 accgacacattgacactaataataatttgagaaaatgacataattcaatgtaattata 34201059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 34739133 - 34739080
Alignment:
Q  143 acaccgacacatggacatagataataatgtgagaaaataacataattcaatgta 196  Q
    |||||||||| | ||||| ||||||||| ||||||||| |||||||||||||||    
T  34739133 acaccgacacgttgacatcgataataatatgagaaaatgacataattcaatgta 34739080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 3025559 - 3025603
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtc 208  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||||    
T  3025559 taataatttgagaaaatcacataattcagtgtaattataggtgtc 3025603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 8798882 - 8798838
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtc 208  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||    
T  8798882 taataatttgagaaaataacataattcaatataattatatgtgtc 8798838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 14740737 - 14740772
Alignment:
Q  163 ataataatgtgagaaaataacataattcaatgtaat 198  Q
    |||||||||||||||||| |||||||||||||||||    
T  14740737 ataataatgtgagaaaatgacataattcaatgtaat 14740772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 37225795 - 37225760
Alignment:
Q  163 ataataatgtgagaaaataacataattcaatgtaat 198  Q
    |||||||| |||||||||||||||||||||||||||    
T  37225795 ataataatttgagaaaataacataattcaatgtaat 37225760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 284
Target Start/End: Original strand, 40063958 - 40064082
Alignment:
Q  163 ataataatgtgagaaaataacataattcaatgtaattataggtgtcgtgtgttggtatcagacacg-----gatgcgtgttcgacaccgggacacaccta 257  Q
    |||||||| ||||||||| |||||||||| |||||| ||||| |||||||   ||| ||  |||||     || | |||| ||||||||||||||| |||    
T  40063958 ataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtc--ggtgtccaacacgtcgccgacgtgtgtccgacaccgggacacatcta 40064055  T
Q  258 atccgaagagtgtccgtacttcataga 284  Q
    |||||| |||||||||| || ||||||    
T  40064056 atccgaggagtgtccgtgctacataga 40064082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 4611542 - 4611580
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattata 202  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  4611542 taataatttgagaaaataacataattcagtgtaattata 4611580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 14227229 - 14227263
Alignment:
Q  163 ataataatgtgagaaaataacataattcaatgtaa 197  Q
    |||||||| ||||||||||||||||||||||||||    
T  14227229 ataataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 16641951 - 16641909
Alignment:
Q  241 acaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||||||||||||||||||||| ||||||| || ||||||||    
T  16641951 acaccgggacacacctaatccgaggagtgtctgtgcttcatag 16641909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 12606880 - 12606835
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||| ||||||||| | ||||||||||||||||||| ||||||    
T  12606880 taataatttgagaaaatcatataattcaatgtaattatatgtgtcg 12606835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 22652057 - 22652106
Alignment:
Q  234 gtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||| ||||||||||||||  ||||||||| |||||||||| ||||||||    
T  22652057 gtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 15816102 - 15816058
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||||||||| ||||||||||  ||||||||| ||||||||    
T  15816102 cgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 16987990 - 16988030
Alignment:
Q  241 acaccgggacacacctaatccgaagagtgtccgtacttcat 281  Q
    |||||||||||| |||||||||| |||||||||| ||||||    
T  16987990 acaccgggacacccctaatccgaggagtgtccgtgcttcat 16988030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 17751731 - 17751775
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||||||||| |||||||||| |||||||||  ||||||||    
T  17751731 cgacaccgggacacgcctaatccgaggagtgtccgcgcttcatag 17751775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 17760718 - 17760762
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||||||||||||| |||||||||| |||||||||  ||||||||    
T  17760718 cgacaccgggacacgcctaatccgaggagtgtccgcgcttcatag 17760762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 453 - 403
Alignment:
Q  232 gcgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcata 282  Q
    |||||| ||||||||||||||||||||||||| |||||||||| |||||||    
T  453 gcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 236973 - 236914
Alignment:
Q  224 acacggatgcgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||||||||||||  ||||||||||||||||||||| || ||||||| || ||||||||    
T  236973 acacggatgcgtgtctgacaccgggacacacctaatctgaggagtgtctgtgcttcatag 236914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 241674 - 241726
Alignment:
Q  233 cgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatagat 285  Q
    ||||| |||||||||||||| ||||||||||  ||||||||| ||||||||||    
T  241674 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatagat 241726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 99899 - 99944
Alignment:
Q  162 gataataatgtgagaaaataacataattcaatgtaattataggtgt 207  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||    
T  99899 gataataattttagaaaataacataattcaatgtaattatatgtgt 99944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 13499 - 13543
Alignment:
Q  239 cgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    ||||| ||||| ||||||||||||| |||||||||||||||||||    
T  13499 cgacatcgggatacacctaatccgaggagtgtccgtacttcatag 13543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 2987 - 3058
Alignment:
Q  211 gtgttggtatcagacacggatgcgtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcatag 283  Q
    |||| ||||||||||||| |  ||||||||||||||| |||| |||||||||| |||||||||| || |||||    
T  2987 gtgtcggtatcagacacg-acacgtgttcgacaccggaacacgcctaatccgaggagtgtccgtgctccatag 3058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 240073 - 240027
Alignment:
Q  163 ataataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    |||||||| ||||||||||| ||||||||||||||| ||| ||||||    
T  240073 ataataatttgagaaaataatataattcaatgtaatcatatgtgtcg 240027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 70286 - 70331
Alignment:
Q  164 taataatgtgagaaaataacataattcaatgtaattataggtgtcg 209  Q
    ||||||| ||| |||||||||||||||| |||||||||| ||||||    
T  70286 taataatttgaaaaaataacataattcagtgtaattataagtgtcg 70331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 32774 - 32822
Alignment:
Q  234 gtgttcgacaccgggacacacctaatccgaagagtgtccgtacttcata 282  Q
    |||| |||||||||||||||| |||||||| ||||||| || |||||||    
T  32774 gtgtccgacaccgggacacacataatccgaggagtgtcggtgcttcata 32822  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 25998 - 26050
Alignment:
Q  156 gacatagataataatgtgagaaaataacataattcaatgtaattataggtgtc 208  Q
    ||||| ||||||||||||||||||| |||| ||||| || ||| |||||||||    
T  25998 gacatcgataataatgtgagaaaatgacatgattcagtgcaatcataggtgtc 26050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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