View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13925_high_15 (Length: 347)
Name: NF13925_high_15
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 329
Target Start/End: Original strand, 45393879 - 45394195
Alignment:
| Q |
10 |
ataattctattctacggcatggcactttgcttcatgacaagttcatcagccctttcaacaagcttcctccttaactcataaatggatatcataaattgtt |
109 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
45393879 |
ataattctattctagggcatgacactttgcttcatgacaagttcatcagccctttcaacaagcttcctccttaactcgtaaatggacaccataaattgtt |
45393978 |
T |
|
| Q |
110 |
caagttgatcactactcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttctt |
209 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45393979 |
caagctgatcactactcatatcatcaattgaatcattccaccagtcacc---cttgttgaaaatcttagccaaattttgaacatcttctagtttcttctt |
45394075 |
T |
|
| Q |
210 |
ttccatctccaacatcttttgtgcctccacatattgtctattgtaatcttggtaggtcagaaaattttctgctacctttgaatcctcaaactcagtggtt |
309 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||| | | ||| || ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45394076 |
ttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctttgcaagtcggagaattttctgctgactttgaatcctcaaactcagtggtt |
45394175 |
T |
|
| Q |
310 |
cctttgatgtagctgttgag |
329 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
45394176 |
cctttgatgtagctattgag |
45394195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 124 - 329
Target Start/End: Original strand, 52740601 - 52740806
Alignment:
| Q |
124 |
ctcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaaca |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52740601 |
ctcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaaca |
52740700 |
T |
|
| Q |
224 |
tcttttgtgcctccacatattgtctattgtaatcttggtaggtcagaaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagct |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52740701 |
tcttttgtgcctccacatattgtctattgtaatcttggtaggtcagaaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagct |
52740800 |
T |
|
| Q |
324 |
gttgag |
329 |
Q |
| |
|
|||||| |
|
|
| T |
52740801 |
gttgag |
52740806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 52740460 - 52740601
Alignment:
| Q |
10 |
ataattctattctacggcatggcactttgcttcatgacaagttcatcagccctttcaacaagcttcctccttaactcataaatggatatcataaattgtt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52740460 |
ataattctattctacggcatggcactttgcttcatgacaagttcatcagccctttcaacaagcttcctccttaactcataaatggatatcataaattgtt |
52740559 |
T |
|
| Q |
110 |
caagttgatcactactcatatcatcaattgaatcattccacc |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52740560 |
caagttgatcactactcatatcatcaattgaatcattccacc |
52740601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 13539187 - 13539262
Alignment:
| Q |
80 |
ttaactcataaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccaccaatc |
155 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
13539187 |
ttaactctttaatggattccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccaccaatc |
13539262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 13539272 - 13539351
Alignment:
| Q |
180 |
caaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatctt |
259 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| ||||||||| ||| ||||||| ||||| |||||||||| |||| |
|
|
| T |
13539272 |
caaattttgaacatcggctagtttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtactctt |
13539351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 50 - 323
Target Start/End: Complemental strand, 35782431 - 35782161
Alignment:
| Q |
50 |
gttcatcagccctttcaacaagcttcctccttaactcataaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattcca |
149 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||||||| ||||||| |||||||| |||||| ||||||||| |||| |||||||| || |||||||| |
|
|
| T |
35782431 |
gttcatcagccttttcaagtagcttcctctttaactcagaaatggactccataaattcttcaagctgatcactattcatctcatcaatagattcattcca |
35782332 |
T |
|
| Q |
150 |
ccaatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtcta |
249 |
Q |
| |
|
||| | |||| | || ||||||||| |||||||| |||||| | ||||||| |||||||| ||||||| |||| |||||||| |||||||| || |
|
|
| T |
35782331 |
ccagt---tacccatattccaaatcttagtcaaattttcaacatcagcaagtttctgtttttccatttccaacacctttagtgcctcctcatattgttta |
35782235 |
T |
|
| Q |
250 |
ttgtaatcttggtaggtcagaaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagct |
323 |
Q |
| |
|
||||| |||| ||||||| | ||||| | | | |||||| | ||||||||| ||||||| ||||||||||| |
|
|
| T |
35782234 |
ttgtactctttgtaggtcgaagaatttcccgttgagtttgaaacatcaaactcaatggttccattgatgtagct |
35782161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 254
Target Start/End: Complemental strand, 47836428 - 47836263
Alignment:
| Q |
89 |
aaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatctt---agccaaatt |
185 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| || || |||| ||| |||||| | |
|
|
| T |
47836428 |
aaatggacaccataaattgttcaagcacttcactactcatattgtcaattgaatcattccaccaat---cacctttcttcaaaaacttggccgccaaaat |
47836332 |
T |
|
| Q |
186 |
ttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgta |
254 |
Q |
| |
|
|| | ||||| |||||||||||| || | ||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
47836331 |
ttcagcatctgttagtttcttcttctctaactctaacatctttaatgcctcctcatattgtctattgta |
47836263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 9668163 - 9668238
Alignment:
| Q |
80 |
ttaactcataaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccaccaatc |
155 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
9668163 |
ttaactctttaatggattccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccaccaatc |
9668238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 9668248 - 9668327
Alignment:
| Q |
180 |
caaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatctt |
259 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| ||||||||| ||| ||||||| ||||| |||||||||| |||| |
|
|
| T |
9668248 |
caaattttgaacatcggctagtttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtactctt |
9668327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University