View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13925_high_17 (Length: 327)

Name: NF13925_high_17
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13925_high_17
NF13925_high_17
[»] chr5 (14 HSPs)
chr5 (20-313)||(28080547-28080840)
chr5 (20-119)||(28080804-28080903)
chr5 (20-115)||(28080871-28080966)
chr5 (24-115)||(28080934-28081025)
chr5 (24-82)||(27930000-27930058)
chr5 (24-82)||(27930408-27930466)
chr5 (24-82)||(27930612-27930670)
chr5 (24-82)||(28081171-28081229)
chr5 (24-82)||(28081375-28081433)
chr5 (24-82)||(28081579-28081637)
chr5 (24-82)||(28081783-28081841)
chr5 (24-82)||(27930816-27930874)
chr5 (33-87)||(27931029-27931083)
chr5 (24-82)||(27930204-27930262)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 28080840 - 28080547
Alignment:
Q  20 ttcaagacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgccaatcttttgaccagcgatcgtta 119  Q
    |||||||||| | ||| ||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  28080840 ttcaagacattgccaaccttttgaacagcaatcgttatcatcatctaatcatttgttcaacagttcaagacattgccgatcttttgaccagcgatcgtta 28080741  T
Q  120 cttcatatgaatgattctacaggtactatcaattttccggttgatcctctcattgatatttctcaacactcgaatatgatgagtattggcaacaagaatt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080740 cttcatatgaatgattctacaggtactatcaattttccggttgatcctctcattgatatttctcaacactcgaatatgatgagtattggcaacaagaatt 28080641  T
Q  220 tgtatccacacttatcctatcaagggacaccaactctacaattgcatcatgtttctgattatgcagtagataacaatgtcatcaatgatgatgt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28080640 tgtatccacacttatcctatcaagggacaccaactctacaattgcatcatgtttctgattatgcagtagataacaatgtcatcaatgatgatgt 28080547  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 28080903 - 28080804
Alignment:
Q  20 ttcaagacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgccaatcttttgaccagcgatcgtta 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||    
T  28080903 ttcaagacatcgccaatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgccaaccttttgaacagcaatcgtta 28080804  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 28080966 - 28080871
Alignment:
Q  20 ttcaagacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgccaatcttttgaccagcgatc 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  28080966 ttcaagacatcgccaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacagttcaagacatcgccaatcttttgaccagcgatc 28080871  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 28081025 - 28080934
Alignment:
Q  24 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaagacattgccaatcttttgaccagcgatc 115  Q
    |||||| | ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  28081025 agacattgccaatcttttgaactgcgatcattatcatcatctaatcatttgttcaacagttcaagacatcgccaatcttttgaccagcgatc 28080934  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 27930000 - 27930058
Alignment:
Q  24 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 82  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27930000 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930058  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 27930408 - 27930466
Alignment:
Q  24 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 82  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27930408 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930466  T

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Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 27930612 - 27930670
Alignment:
Q  24 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 82  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27930612 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 27930670  T

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Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 28081229 - 28081171
Alignment:
Q  24 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 82  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28081229 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081171  T

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Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 28081433 - 28081375
Alignment:
Q  24 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 82  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28081433 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081375  T

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Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 28081637 - 28081579
Alignment:
Q  24 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 82  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28081637 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081579  T

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Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 28081841 - 28081783
Alignment:
Q  24 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 82  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28081841 agacattgtcaatcttttgaccagcgatcattatcatcatctaatcatttgttcaacag 28081783  T

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Target: chr5; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 27930816 - 27930874
Alignment:
Q  24 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 82  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  27930816 agacattgtcaatcttttgaccaacgatcattatcatcatctaatcatttgttcaacag 27930874  T

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Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 27931029 - 27931083
Alignment:
Q  33 caatcttttgaccagcgatcattatcatcatctaatcattttttcaacagttcaa 87  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  27931029 caatcttttgaccaacgatcattatcatcatctaatcatttgttcaacagttcaa 27931083  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 27930204 - 27930262
Alignment:
Q  24 agacatcgtcaatcttttgaccagcgatcattatcatcatctaatcattttttcaacag 82  Q
    |||||| | |||||||||||||||| ||||||||||||||||||| |||| ||| ||||    
T  27930204 agacattgccaatcttttgaccagcaatcattatcatcatctaattatttgttcgacag 27930262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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