View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13925_high_19 (Length: 323)

Name: NF13925_high_19
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13925_high_19
NF13925_high_19
[»] chr7 (1 HSPs)
chr7 (1-306)||(946417-946707)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 946707 - 946417
Alignment:
Q  1 tgttcaattgtagtacttatattgaacatgtgtgtgtaatctattttgattttgatgaatgaaggcgcttgaaggatttggtgtatctaaagtaatacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  946707 tgttcaattgtagtacttatattgaacatgtgtgtgtaatctattttgattttgatgaatgaaggcgcttgaaggatttggtgtatctaaagtaatacaa 946608  T
Q  101 tctgataatccaaatttcaaggctggtgattacatttctgggtttactggctgggaggaatacagcatcatcactaaaacagaccagttgcgaaaaattg 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  946607 tctgataatccaaatttcaaggctggtcattacatttctgggtttactggctgggaggaatacagcatcatcactaaaacagaccagttgcgaaaaattg 946508  T
Q  201 agcctgatgatcacattcctctttccttccatctcggtcttctaggtacctagctagtttgtaccaaatacttctcttcacattaatttgataaataatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||    
T  946507 agcctgatgatcacattcctctttccttccatctcggtcttctagg---------------taccaaatacttctcttcacattaatttgataaataatt 946423  T

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