View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_high_24 (Length: 269)
Name: NF13925_high_24
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 2420769 - 2420525
Alignment:
| Q |
11 |
catcatcatcatcttcataaggcatcaaactc-ataagctcatttcataattaaaaactagaagctcttcaaacccttacaaatcaaacacttaaattcc |
109 |
Q |
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| T |
2420769 |
catcatcatcttcttcataaggcatcaaaccccagaagctcatttcataattaaaaaccagaagctctccaagcccttacaaatcaaacacttaaattcc |
2420670 |
T |
|
| Q |
110 |
tctct--acttcatcctctatcaaactcaaaacatatcacacccttattctcttacaatccttctttcctctttaaatccttccattaaactagacatta |
207 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
2420669 |
tctctctacttcatcctctgtcaaactcaaaacatatcacacccttattctctcccaatccttctttcctctttaaatccttccattaaactaggcatca |
2420570 |
T |
|
| Q |
208 |
gaaactgctgcaaacccacaaccaaatcacaaatcattgaagctg |
252 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2420569 |
gaaactgatgcaaacccacaaccaaatcacaaatcattgaagctg |
2420525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 83 - 252
Target Start/End: Complemental strand, 10615840 - 10615682
Alignment:
| Q |
83 |
cccttacaaatcaaacacttaaattcctctct--acttcatcctctatcaaactcaaaacatatcacacccttattctcttacaatccttctttcctctt |
180 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10615840 |
cccttacaaatcaaacacttaaattcctctctctacttcatcctctatcaaactcaaaacatatcacacccttattctctcccaatccttctttcct--- |
10615744 |
T |
|
| Q |
181 |
taaatccttccattaaactagacattagaaactgctgcaaacccacaaccaaatcacaaatcattgaagctg |
252 |
Q |
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| T |
10615743 |
----------cattaaactaggcatcagaaactgctgcaaacccacaaccaaatcacaaatcattgaagctg |
10615682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 46469398 - 46469641
Alignment:
| Q |
12 |
atcatcatcatcttcataaggcatcaaactc-ataagctcatttcataattaaaaactagaagctcttcaaacccttacaaatcaaacacttaaattcct |
110 |
Q |
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||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
46469398 |
atcatcatcttcttcataaggcatcaaaccccagaagctcatttcataattaaaaaccagaagctctccaagcccttacaaatcaaacacttaaattcct |
46469497 |
T |
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| Q |
111 |
ct--ctacttcatcctctatcaaactcaaaacatatcacacccttattctcttacaatccttctttcctctttaaatccttccattaaactagacattag |
208 |
Q |
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|| |||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
46469498 |
ctctctacttcatcctctgtcaaactcaaaatatatcacacccttattctctcccaatccttctttcctctttaaatccttccattaaactaggcatcag |
46469597 |
T |
|
| Q |
209 |
aaactgctgcaaacccacaaccaaatcacaaatcattgaagctg |
252 |
Q |
| |
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|
| T |
46469598 |
aaactgctgcaaacccacaaccaaatcacaaatcattgaagctg |
46469641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 18240783 - 18240864
Alignment:
| Q |
80 |
aaacccttacaaatcaaacacttaaattcctctct----acttcatcctctatcaaactcaaaacatatcacacccttattctc |
159 |
Q |
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||||||||| ||||||||||||| ||||||||||| |||||||| || ||||||||||| | ||||| |||||||||||| |
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| T |
18240783 |
aaacccttaaaaatcaaacactttaattcctctctctcaacttcatc--ctgtcaaactcaaaccgtatcaaacccttattctc |
18240864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 41699385 - 41699348
Alignment:
| Q |
203 |
cattagaaactgctgcaaacccacaaccaaatcacaaa |
240 |
Q |
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|||| ||||| ||||||||||||||||||||||||||| |
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| T |
41699385 |
cattggaaaccgctgcaaacccacaaccaaatcacaaa |
41699348 |
T |
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