View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_high_25 (Length: 266)
Name: NF13925_high_25
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 4535182 - 4534949
Alignment:
| Q |
12 |
aatacttaagatatgatgtaattcatatataatttaaatatgattatcttcttccaaataaagtcatcgtccaacacataccatttaatcaactttagtt |
111 |
Q |
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| T |
4535182 |
aatatttaagatatgatgtaattcatatataatttaaatatgattatcttcttccaaataaagtcatcgtccaacacataccatttaatcaactttagtt |
4535083 |
T |
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| Q |
112 |
ccattacacaacattagctaataatcatcgaataaccacagtagataaaagtcacacaaacaatattacatagataaaagagaaactaatcaaaaaagtt |
211 |
Q |
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| T |
4535082 |
ccattacacaacattagctaataatcatcgaataaccacagtagataaaagt--cacaaacaatattacatagataaaagagaaactaatcaaaaaagtt |
4534985 |
T |
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| Q |
212 |
cttctcaacaatagattaaaaatctcttgatgattc |
247 |
Q |
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| T |
4534984 |
cttctcaacaatagattaaaaatctcttgatgattc |
4534949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 48867578 - 48867392
Alignment:
| Q |
17 |
ttaagatatgatgtaattcatatataatttaaatatgattatcttcttccaaataaa---gtcatcgtccaacacataccatttaatcaactttagttcc |
113 |
Q |
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| T |
48867578 |
ttaaaatataatgtaattcatagataatttaaatatgattatctcctttcaaataaaaaagtcatcgaccaata--taacttttactcgactttagttcc |
48867481 |
T |
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| Q |
114 |
attacacaacattagctaataatcatcgaataaccacagtagataaaagtcacacaaac-aatattacatagataaaagagaaactaat |
201 |
Q |
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| T |
48867480 |
attacacaacattaactaataatcatcaaataaccatattagttgaacgtcacacaaacaaatattacatagataaaagagaaactaat |
48867392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 242
Target Start/End: Complemental strand, 3975832 - 3975692
Alignment:
| Q |
103 |
actttagttccattacacaacattagctaataatcatcgaataaccacagtagataaaagtcacacaaaca-atattacatagataaaagagaaactaat |
201 |
Q |
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| T |
3975832 |
actttagttccattacacaacattgaccaataataa-caaataaccacattagttaaaagtcacaaaaacatatacttcattgataaaagataaagtagt |
3975734 |
T |
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| Q |
202 |
caaaaaagtt-cttctcaacaatagattaaaaatctcttgat |
242 |
Q |
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| T |
3975733 |
caaaaaaattacttctcaacaatagattcaacatctcttgat |
3975692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 21489786 - 21489900
Alignment:
| Q |
12 |
aatacttaagatatgatgtaattcatatataatttaaatatgattatcttcttccaaat---aaagtcatcgtccaacacataccatttaatcaacttta |
108 |
Q |
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| T |
21489786 |
aatatttaagatataatttaattcatagataatttaaatatgaatatcttattacaaatcaaaaagtcaacgaaca--acataccatttagtccacttta |
21489883 |
T |
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| Q |
109 |
gttccattacacaacat |
125 |
Q |
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| T |
21489884 |
gttcaattacacaacat |
21489900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 24061896 - 24061967
Alignment:
| Q |
173 |
aatattacatagataaaagagaaactaatcaaaaaa-gttcttctcaacaatagattaaaaatctcttgatg |
243 |
Q |
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||||||||||| ||||| || |||||||| |||||| ||| || ||||||||||||| || ||||||||||| |
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| T |
24061896 |
aatattacataaataaacgataaactaataaaaaaaagtttttttcaacaatagattcaacatctcttgatg |
24061967 |
T |
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