View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_high_8 (Length: 470)
Name: NF13925_high_8
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 53919150 - 53919570
Alignment:
| Q |
18 |
gcatctactcattggaattcgagttttgattcgtcatgtgagggacaaatctcccttcgatgatcatattaacttaatatagaatccttgcactcagacc |
117 |
Q |
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| T |
53919150 |
gcatctactcattggaattcgagttttgattcgtcatgtgagggacaaacctcccttcgatgatcatattaacttaatatagaatccttgcactcagacc |
53919249 |
T |
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| Q |
118 |
ttcaatgtattcatagctatttaaccagatgacatattttaatctatgttctttatatccatcaatctgtgaaggaatttataacaaaatatataactga |
217 |
Q |
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| T |
53919250 |
ttcaatgtattcatatctatttaaccagatgacatattttaatctatgttctttatatccatcaatctgtgaaggaatttataacaaaatatataactga |
53919349 |
T |
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| Q |
218 |
tcccaatttcttttaaacattttataagtataaaattttcctgtcatttaacattgactaatcttctttgaagagcctcctaggcacaaaagatagattc |
317 |
Q |
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| T |
53919350 |
tcccaatttcttttaaacattttataagtataaaattttcctgtcatttaacattgactaatcttctttgaagagcctgctaggcacaaaagatagattc |
53919449 |
T |
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| Q |
318 |
tctcctcccnnnnnnntgtgggttcccctcccaattaaattttctcaatatgcaagagttggggatcaagcccttgacctcttacttaaggagaaaaaat |
417 |
Q |
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| T |
53919450 |
tctcctcccaaaaaaatgtgggttcccctcccaattaaattttctcaatatgcaagagttggggatcaagcccttgacctcttac------ggaaaaaat |
53919543 |
T |
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| Q |
418 |
gacgacccatttagaccaatcaattac |
444 |
Q |
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| T |
53919544 |
gacgacccatttagaccaatcaattac |
53919570 |
T |
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