View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_low_13 (Length: 414)
Name: NF13925_low_13
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 48966151 - 48966057
Alignment:
| Q |
301 |
ggatacttgagaaaacaaatggataggatccatttcagtttcagacagtatacacaagatgctaaatcacacggagtattctcgttcatcggaag |
395 |
Q |
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| T |
48966151 |
ggatacttgagaaaacaaatggataggatccatttcagtttcagacagtatacacaagatgctaaatcacacggagtattctcgttcatcggaag |
48966057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 48966463 - 48966374
Alignment:
| Q |
26 |
agaatataacctcaatatcatagtaagatgatgatttgatagattgattagcatgaaaattttggtaaaggtcattcatctaacatatcac |
116 |
Q |
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| T |
48966463 |
agaatataacctcaatatcatagtaagatgatgata-gattgattgattagcatgaaaattttggtaaaggtcattcatctaatatatcac |
48966374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 48966246 - 48966197
Alignment:
| Q |
246 |
atattacatgacacatgagagtccattgaagcccgaactcacctcccatt |
295 |
Q |
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| T |
48966246 |
atattacatgacacatgagagttcattgaaacccgaactcacctcccatt |
48966197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 48966317 - 48966260
Alignment:
| Q |
190 |
catataatcactcaacgaataattaagatgataactgagttcattatgtcaaagctatatta |
251 |
Q |
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| T |
48966317 |
catataatcactcaacgaataa----gatgataacagagttcattatgtcaaagctaaatta |
48966260 |
T |
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