View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13925_low_19 (Length: 327)

Name: NF13925_low_19
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13925_low_19
NF13925_low_19
[»] chr3 (18 HSPs)
chr3 (22-317)||(23500592-23500887)
chr3 (21-309)||(23448828-23449116)
chr3 (73-317)||(23406378-23406603)
chr3 (72-317)||(23441487-23441734)
chr3 (72-317)||(23474019-23474266)
chr3 (198-317)||(23353635-23353754)
chr3 (41-317)||(23465000-23465257)
chr3 (38-152)||(23353458-23353572)
chr3 (197-317)||(23435205-23435325)
chr3 (197-309)||(23455768-23455880)
chr3 (40-187)||(23480297-23480444)
chr3 (201-317)||(23388127-23388243)
chr3 (127-191)||(23455657-23455721)
chr3 (198-317)||(23480495-23480614)
chr3 (213-311)||(36004456-36004554)
chr3 (207-309)||(36025211-36025313)
chr3 (250-320)||(36034062-36034132)
chr3 (250-307)||(36017156-36017213)
[»] scaffold0570 (3 HSPs)
scaffold0570 (40-197)||(10068-10225)
scaffold0570 (197-317)||(9909-10029)
scaffold0570 (269-317)||(3485-3533)
[»] scaffold0201 (2 HSPs)
scaffold0201 (40-197)||(13115-13272)
scaffold0201 (197-317)||(13311-13431)
[»] chr4 (1 HSPs)
chr4 (202-278)||(12894911-12894987)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 22 - 317
Target Start/End: Original strand, 23500592 - 23500887
Alignment:
Q  22 caggcacatcaacatcattgtttactttctaaagttattattagctttcattttctcaaatttatgttcatttccaatcacgaatatggagatgaaacac 121  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23500592 caggcacatcagcatcattgtttactttctaaagttattattagctttcattttctcaaatttatgttcatttccaatcacgaatatggagatgaaaaac 23500691  T
Q  122 ttgtgtagtaaaaaattgtgctatattagaaaacaaaacttgcaaatcataggatatagtttattgatttacttaggatagttcgttttacttacctgta 221  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23500692 ttgtgttgtaaaaaattgtgctatattagaaaacaaaacttgcaaatcataggatatagtttattgatttacttaggatagttcgttttacttacctgta 23500791  T
Q  222 atttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgcctatg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23500792 atttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgcttatg 23500887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 309
Target Start/End: Original strand, 23448828 - 23449116
Alignment:
Q  21 ccaggcacatcaacatcattgtttactttctaaagttattattagctttcattttctcaaatttatgttcatttccaatcacgaatatggagatgaaaca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  23448828 ccaggcacatcaacatcattgtttactttctaaagttattattagctttcattttctcaaatttatgttcatttccaatcacgaatatggaaatgaaaaa 23448927  T
Q  121 cttgtgtagtaaaaaattgtgctatattagaaaacaaaacttgcaaatcataggatatagtttattgatttacttaggatagttcgttttacttacctgt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23448928 cttgtgtagtaaaaaattgtgctatattagaaaacaaaacttgcaaatcataggatatagtttattgatttacttaggatagttcgttttacttacctat 23449027  T
Q  221 aatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatct 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23449028 aatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatct 23449116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 73 - 317
Target Start/End: Original strand, 23406378 - 23406603
Alignment:
Q  73 tttctcaaatttatgttcatttccaatcacgaatatggagatgaaacacttgtgtagtaaaaaattgtgctatattagaaaacaaaacttgcaaatcata 172  Q
    ||||| ||||||||||||||||||||  || ||||||||||||||| |||| || |||||| ||||||||||||||||||| |||||| | ||||| |||    
T  23406378 tttctaaaatttatgttcatttccaactacaaatatggagatgaaagacttatgaagtaaataattgtgctatattagaaa-caaaacattcaaatgata 23406476  T
Q  173 ggatatagtttattgatttacttaggatagttcgttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatcttt 272  Q
    ||| |||||||||||||||                  ||||| ||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23406477 ggaaatagtttattgattt------------------tacttgcctataattttgagagtcccaaccaaccaaattagctgcctcagtgagagaatcttt 23406558  T
Q  273 ccatttcttcaacttgtcattattgtgcttcaaatctcgcctatg 317  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||    
T  23406559 ccatttcttcaacttgtcattattgtgctttaaatctcgcttatg 23406603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 72 - 317
Target Start/End: Original strand, 23441487 - 23441734
Alignment:
Q  72 ttttctcaaatttatgttcatttccaatcacgaatatggagatgaaacacttgtgtagtaaaaaattgtgctatattagaaaacaaaacttgcaaatcat 171  Q
    |||||| ||||||||||||||||||||| | |||||||||||||||| |||  ||||||||| |  ||||||||||||||||||||||| || |||| ||    
T  23441487 ttttctaaaatttatgttcatttccaattaagaatatggagatgaaagactcatgtagtaaatagctgtgctatattagaaaacaaaacatgtaaatgat 23441586  T
Q  172 aggatatagtttattga-tttacttagga-tagttcgttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatc 269  Q
    | || |||||||||| | ||||||| | | |  ||||||||  ||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | |||    
T  23441587 atgaaatagtttatttattttacttcgaattttttcgttttgtttacctgtaattttgagagtcccaaccaactaaactagctgcctcagtgagtgcatc 23441686  T
Q  270 tttccatttcttcaacttgtcattattgtgcttcaaatctcgcctatg 317  Q
    |||||||| ||  |||||||||||||||  ||||||||||||| ||||    
T  23441687 tttccattcctgtaacttgtcattattgctcttcaaatctcgcttatg 23441734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 72 - 317
Target Start/End: Original strand, 23474019 - 23474266
Alignment:
Q  72 ttttctcaaatttatgttcatttccaatcacgaatatggagatgaaacacttgtgtagtaaaaaattgtgctatattagaaaacaaaacttgcaaatcat 171  Q
    |||||| ||||||||||||||||||||| | ||| |||||||||||| |||  ||||||||| |  ||||||||||||||||||||||| || |||| ||    
T  23474019 ttttctaaaatttatgttcatttccaattaagaaaatggagatgaaagactcatgtagtaaatagctgtgctatattagaaaacaaaacatgtaaatgat 23474118  T
Q  172 aggatatagtttattgattt-acttaggatagtt-cgttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatc 269  Q
    | || |||||||||| |||| |||| | ||  || ||||||  ||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | |||    
T  23474119 atgaaatagtttatttattttacttcgaattttttcgttttgtttacctgtaattttgagagtcccaaccaactaaactagctgcctcagtgagtgcatc 23474218  T
Q  270 tttccatttcttcaacttgtcattattgtgcttcaaatctcgcctatg 317  Q
    |||||||| ||  |||||||||||||||  ||||||||||||| ||||    
T  23474219 tttccattcctgtaacttgtcattattgctcttcaaatctcgcttatg 23474266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 198 - 317
Target Start/End: Original strand, 23353635 - 23353754
Alignment:
Q  198 gatagttcgttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattg 297  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||    
T  23353635 gatagttcgttttactcacctataatttcgagagtcccaaccaactaaattagctgcctcggtgagagcagctttccatttctccaacttgtcattattg 23353734  T
Q  298 tgcttcaaatctcgcctatg 317  Q
    ||||||||||||||| ||||    
T  23353735 tgcttcaaatctcgcttatg 23353754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 41 - 317
Target Start/End: Original strand, 23465000 - 23465257
Alignment:
Q  41 gtttactttctaaagttattattagctttcattttctcaaatttatgttcatttccaatcacgaatatggagatgaaacacttgtgtagtaaaaaattgt 140  Q
    |||||||||||||| ||||  || |  |||| ||||| ||||||||||||||||||||  || ||||||||||||||| |||| || |||||| ||||||    
T  23465000 gtttactttctaaaattatatttcgtcttcaatttctaaaatttatgttcatttccaactacaaatatggagatgaaagacttatgaagtaaacaattgt 23465099  T
Q  141 gctatattagaaaacaaaacttgcaaatcataggatatagtttattgatttacttaggatagttcgttttacttacctgtaatttcgagagtcccaacca 240  Q
    |||||||||| ||||||||| | ||||| |||||| ||||||||||||                  |||||||||||| |||||||||||||||||||||    
T  23465100 gctatattag-aaacaaaacattcaaatgataggaaatagtttattga------------------ttttacttacctataatttcgagagtcccaacca 23465180  T
Q  241 accaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgcctatg 317  Q
    || ||||||||||| || ||||||| | |||||||||||| |||||| || |||||||||||||||| |||| ||||    
T  23465181 actaaattagctgcatcagtgagagcagctttccatttctccaacttatcgttattgtgcttcaaatttcgcttatg 23465257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 23353458 - 23353572
Alignment:
Q  38 attgtttactttctaaagttattattagctttcattttctcaaatttatgttcatttccaatcacgaatatggagatgaaacacttgtgtagtaaaaaat 137  Q
    ||||||||||||||||| ||||| || ||||||||||||| |||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||    
T  23353458 attgtttactttctaaaattattttttgctttcattttctaaaatctatgttcatttccagtcacgaatatggagatgaaagacttgtgtagtaaataat 23353557  T
Q  138 tgtgctatattagaa 152  Q
    |||||| | ||||||    
T  23353558 tgtgctgttttagaa 23353572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 23435205 - 23435325
Alignment:
Q  197 ggatagttcgttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattatt 296  Q
    |||||| ||||||| ||||||| |||||| |||||||||||||||| |||||||||||||| |||||||   |||||||||| | |||||||||||||||    
T  23435205 ggataggtcgtttttcttacctataattttgagagtcccaaccaactaaattagctgcctcagtgagagcggctttccatttatgcaacttgtcattatt 23435304  T
Q  297 gtgcttcaaatctcgcctatg 317  Q
    |||||||||||||||| ||||    
T  23435305 gtgcttcaaatctcgcttatg 23435325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 197 - 309
Target Start/End: Original strand, 23455768 - 23455880
Alignment:
Q  197 ggatagttcgttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattatt 296  Q
    |||||||| |||||| |||||| |||||| |||||||||| ||||| |||||||||||||| ||||||||  |||||||||||| ||||||| |||||||    
T  23455768 ggatagtttgttttatttacctataattttgagagtcccatccaactaaattagctgcctcagtgagagaggctttccatttctccaacttggcattatt 23455867  T
Q  297 gtgcttcaaatct 309  Q
    |||||||||||||    
T  23455868 gtgcttcaaatct 23455880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 187
Target Start/End: Original strand, 23480297 - 23480444
Alignment:
Q  40 tgtttactttctaaagttattattagctttcattttctcaaatttatgttcatttccaatcacgaatatggagatgaaacacttgtgtagtaaaaaattg 139  Q
    ||||||||||||||| ||| | |||||||||||||| | |||| ||||||||||||||| || ||||| |||||||||| |||  ||||||| | |||||    
T  23480297 tgtttactttctaaaattaattttagctttcattttttaaaatctatgttcatttccaaccatgaataaggagatgaaagactcatgtagtatataattg 23480396  T
Q  140 tgctatattagaaaacaaaacttgcaaatcataggatatagtttattg 187  Q
    ||||||||||||||||||||| || |||| |||  | |||||||||||    
T  23480397 tgctatattagaaaacaaaacatgaaaattatataaaatagtttattg 23480444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 317
Target Start/End: Original strand, 23388127 - 23388243
Alignment:
Q  201 agttcgttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgc 300  Q
    ||||| ||| ||||||||||||||  || ||||||||||||| ||| ||||||||||||  ||||   ||||||||| ||  ||||||||||||||| ||    
T  23388127 agttcctttaacttacctgtaattctgaaagtcccaaccaactaaactagctgcctcggcaagagcggctttccattcctgtaacttgtcattattgagc 23388226  T
Q  301 ttcaaatctcgcctatg 317  Q
    |||||||||||| ||||    
T  23388227 ttcaaatctcgcatatg 23388243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 23455657 - 23455721
Alignment:
Q  127 tagtaaaaaattgtgctatattagaaaacaaaacttgcaaatcataggatatagtttattgattt 191  Q
    ||||||| || ||||||||||||||| ||||||| ||||||| |||||| |||||||||||||||    
T  23455657 tagtaaataactgtgctatattagaatacaaaacatgcaaatgataggaaatagtttattgattt 23455721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 317
Target Start/End: Original strand, 23480495 - 23480614
Alignment:
Q  198 gatagttcgttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattg 297  Q
    |||||||||||||||||||    ||||| || ||||||||||  | ||| |||||||||| |||||||   ||||||||| ||  |||||||||||||||    
T  23480495 gatagttcgttttacttactcaaaattttgaaagtcccaaccgcctaaactagctgcctcagtgagagcggctttccattcctgtaacttgtcattattg 23480594  T
Q  298 tgcttcaaatctcgcctatg 317  Q
      ||||||||||||| ||||    
T  23480595 ctcttcaaatctcgcttatg 23480614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 36004456 - 36004554
Alignment:
Q  213 ttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcg 311  Q
    ||||||||||||| |||||| ||| ||  | ||||| ||||| || || |||| ||||||||||||||| ||| | || || || ||||||||||||||    
T  36004456 ttacctgtaattttgagagtgccaccctgctaaattggctgcttcagttagagcatctttccatttctttaacatttctttgttctgcttcaaatctcg 36004554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 309
Target Start/End: Original strand, 36025211 - 36025313
Alignment:
Q  207 ttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaa 306  Q
    ||||| |||| |||||||| |||||| ||| ||| | ||||| || || |||||||||| |||||||||||| | ||| ||||| ||  | |||||||||    
T  36025211 ttttatttacttgtaattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaa 36025310  T
Q  307 tct 309  Q
    |||    
T  36025311 tct 36025313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 320
Target Start/End: Original strand, 36034062 - 36034132
Alignment:
Q  250 gctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatctcgcctatgctt 320  Q
    ||||| || ||||||| ||||||| |||||| ||||||||| || ||||||||||||| | || |||||||    
T  36034062 gctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttcaaattttgcttatgctt 36034132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 36017156 - 36017213
Alignment:
Q  250 gctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaat 307  Q
    ||||| || ||||||| ||||||| |||||| ||||||||| || |||||||||||||    
T  36017156 gctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttcaaat 36017213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 197
Target Start/End: Complemental strand, 10225 - 10068
Alignment:
Q  40 tgtttactttctaaagttattattagctttcattttctcaaatttatgttcatttccaatcacgaatatggagatg-aaacacttgtgtagtaaaaaatt 138  Q
    ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||    
T  10225 tgtttactttctaaaattatttttagctttcattttctaaaatttatgttcatttccaatcacaaatatggagatgaaaaaacttgtgtagtaagaaatt 10126  T
Q  139 gtgctatattagaaaacaaaacttgcaaatcataggatatagtttattgatttacttag 197  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  10125 gtgctatattagaaaac-aaacttgcaaatcataggatatagcttattgatttacttag 10068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 197 - 317
Target Start/End: Complemental strand, 10029 - 9909
Alignment:
Q  197 ggatagttcgttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattatt 296  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  10029 ggatagttcgttttacttacctataatttcgagagtcccaaccaactaaattagctgcctcggtgagagcggctttccagttcttcaacttgtcattatt 9930  T
Q  297 gtgcttcaaatctcgcctatg 317  Q
    |  ||||||||||||| ||||    
T  9929 gctcttcaaatctcgcttatg 9909  T

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Target: scaffold0570; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 3533 - 3485
Alignment:
Q  269 ctttccatttcttcaacttgtcattattgtgcttcaaatctcgcctatg 317  Q
    |||||||||||| |||||||||||||||||||||||  |||||||||||    
T  3533 ctttccatttctgcaacttgtcattattgtgcttcagttctcgcctatg 3485  T

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Target: scaffold0201 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 40 - 197
Target Start/End: Original strand, 13115 - 13272
Alignment:
Q  40 tgtttactttctaaagttattattagctttcattttctcaaatttatgttcatttccaatcacgaatatggagatgaaacacttgtgtagtaaaaaattg 139  Q
    ||||||||||||||| ||| | |||||||||||||| | |||| ||||||||||||||| || ||||| |||||||||| |||  ||||||||| |||||    
T  13115 tgtttactttctaaaattaattttagctttcattttttaaaatctatgttcatttccaaccatgaataaggagatgaaagactcatgtagtaaataattg 13214  T
Q  140 tgctatattagaaaacaaaacttgcaaatcataggatatagtttattgatttacttag 197  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13215 tgctatgttaaaaaacaaaacttgcaaatcataggatatagtttattgatttacttag 13272  T

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Target: scaffold0201; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 13311 - 13431
Alignment:
Q  197 ggatagttcgttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattatt 296  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||| | |||||||||||| |||||| || |||||    
T  13311 ggatagttcgttttacttacctataatttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaacttatcgttatt 13410  T
Q  297 gtgcttcaaatctcgcctatg 317  Q
    |||||||||||||||| ||||    
T  13411 gtgcttcaaatctcgcttatg 13431  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 12894987 - 12894911
Alignment:
Q  202 gttcgttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccattt 278  Q
    |||| ||||| ||||||||||||| |||||| ||| ||| | ||||| ||||| ||  |||||| ||||||||||||    
T  12894987 gttcattttatttacctgtaattttgagagtgccacccagctaaattggctgcttcaatgagagcatctttccattt 12894911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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