View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_low_2 (Length: 669)
Name: NF13925_low_2
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 18622179 - 18622639
Alignment:
| Q |
1 |
aaccctgataatggcattatggaggaattgagaaagaggtccgaagccgataagaatgacaaatcagtgaaggaccttgtgcttctgctttttgaaaccg |
100 |
Q |
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| T |
18622179 |
aaccctgataatggcattatggaggaactgaggaagaggtccgaagctgataagaatgacaaatcagtgaaggaccttgtgcttctgctttttgaaaccg |
18622278 |
T |
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| Q |
101 |
ctcttttgacttctggttttagccttgatgagccaaacacctttgctggaaggattcataggatgttgaaattgggtcttagcatagatgaggacgaaac |
200 |
Q |
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| T |
18622279 |
ctcttttgacttctggttttagccttgatgagccaaacacctttgctggaaggattcataggatgttgaaattgggtcttagcatagatgaggacgaaac |
18622378 |
T |
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| Q |
201 |
tggagcggatgatgttgacatgcctccattggaagaagatggtgctgaggagagcaagatggaggaagttgactaaaagcctatagattgaaatgatgtt |
300 |
Q |
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| T |
18622379 |
tggagcggatgatgttgacatgcctccattggaagaagatggtgctgaggagagcaagatggaggaagttgactaaaagcctatagattggaatgatgtt |
18622478 |
T |
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| Q |
301 |
agtatgttaaaaagatggtgaaaatatggtggatgctttttgtgtcttggtaactttttgtcttgcatagttatgggtgctgggttttgattttgtctct |
400 |
Q |
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| T |
18622479 |
agtatgtttaaaagatggtgaaaatatggtggatgc--tttgtgtcttggtaactttttgtcttgcatagtaatgggtcataggttttggttttgtct-- |
18622574 |
T |
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| Q |
401 |
gatgtatctgt-tattatcatgtcatcaatgaaaatcaactctttatcttaacaatgtttgattac |
465 |
Q |
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| T |
18622575 |
-ttgtacctgtctattaccatgtcattaatgaaaaaaaattcttcatcttaacaatgtttgattac |
18622639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 482 - 579
Target Start/End: Original strand, 18622711 - 18622810
Alignment:
| Q |
482 |
atgtcactgagccaacaataatttctctgttattcct---ttaaactacaaaaccatctactgcaatatgatagatgaatttcactaatatggttgattt |
578 |
Q |
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| T |
18622711 |
atgtcact-agctaacaataatttctctgttattcctcctttaaaccagaaaaccatctatagctatgcgatggatgaatttcactagtatggttgattt |
18622809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 45060689 - 45060487
Alignment:
| Q |
1 |
aaccctgataatggcattatggaggaattgagaaagaggtccgaagccgataagaatgacaaatcagtgaaggaccttgtgcttctgctttttgaaaccg |
100 |
Q |
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| T |
45060689 |
aaccctgacaatggcattatggaggagctgagaaagagggctgaagctgataagaatgataagtctgtgaaggaccttgtgttgcttctctttgagacag |
45060590 |
T |
|
| Q |
101 |
ctcttttgacttctggttttagccttgatgagccaaacacctttgctggaaggattcataggatgttgaaattgggtcttagcatagatgaggacgaaac |
200 |
Q |
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| || || |||||||| |||||||| ||||| ||||||| |||||||| || ||||| || |||||||| ||||||| ||||| |||||||| || || |
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| T |
45060589 |
cactcttaacttctggatttagcctggatgatccaaacatgtttgctggtagaattcacagaatgttgaagctgggtctcagcattgatgaggaagagac |
45060490 |
T |
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| Q |
201 |
tgg |
203 |
Q |
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||| |
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| T |
45060489 |
tgg |
45060487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 42165053 - 42164957
Alignment:
| Q |
49 |
gataagaatgacaaatcagtgaaggaccttgtgcttctgctttttgaaaccgctcttttgacttctggttttagccttgatgagccaaacacctttg |
145 |
Q |
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|||| |||||||||||| |||||||| ||||| || |||| ||||| || |||||| | || ||||| || |||||||||||||| |||||||||| |
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| T |
42165053 |
gataggaatgacaaatctgtgaaggatcttgtcctcttgctgtttgagactgctcttcttacctctggattcagccttgatgagcccaacacctttg |
42164957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 42175694 - 42175598
Alignment:
| Q |
49 |
gataagaatgacaaatcagtgaaggaccttgtgcttctgctttttgaaaccgctcttttgacttctggttttagccttgatgagccaaacacctttg |
145 |
Q |
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|||| |||||||||||| |||||||| ||||| || |||| ||||| || |||||| | || ||||| || |||||||||||||| |||||||||| |
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| T |
42175694 |
gataggaatgacaaatctgtgaaggatcttgtcctcttgctgtttgagactgctcttcttacctctggattcagccttgatgagcccaacacctttg |
42175598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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