View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_low_24 (Length: 295)
Name: NF13925_low_24
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 46210443 - 46210708
Alignment:
| Q |
16 |
tatccaacaccgagaagtgaggaatgagtagtgcagctgagcaccattgtgtaaaatctgctcctagcaggtataagtgtaatatagatgcatcattttc |
115 |
Q |
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| T |
46210443 |
tatccaacaccgagaagtgaggaatgagtagtgcagctgagcaccattgtgtaaaatctgctcctagcaggtataagtgtaatatagatgcatcattttc |
46210542 |
T |
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| Q |
116 |
cttgtcgctaaataaggtatgacttaacgtgtctaagagacggataaggtaatttcatgcttgcaaaaactgtctggttctccccattttgtgccgtcaa |
215 |
Q |
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| T |
46210543 |
cttgtcgctaaataaggtatgacttaacgtgtctaagagacggataaggtaatttcatgcttgcaaaaactgtctggttctccccattttgtgccgtcaa |
46210642 |
T |
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| Q |
216 |
tgaaagtgaagcgatgggtttgtatacgacacttgggcagcaaaccttcatttcgataatgttgat |
281 |
Q |
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| T |
46210643 |
tgaaagtgaagcgatgggtttgtatacgacacttgggcagcaaaccttcatttcgataatgttgat |
46210708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 250
Target Start/End: Complemental strand, 38246465 - 38246293
Alignment:
| Q |
78 |
cctagcaggtataagtgtaatatagatgcatcattttccttgtcgctaaataaggtatgacttaacgtgtctaagagacggataaggtaatttcatgctt |
177 |
Q |
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| T |
38246465 |
cctagaaggtataaatgaaaaatagatgcctcgttctcctcgtcgcttaataaggtaggacttggaatgtcttagaggcgaagagggtaattttatgctt |
38246366 |
T |
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| Q |
178 |
gcaaaaactgtctggttctccccattttgtgccgtcaatgaaagtgaagcgatgggtttgtatacgacacttg |
250 |
Q |
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| T |
38246365 |
gcaaaaagtacctggttctccccgctttgtgacgtcaatgcgggtgaagcaatgagtttatgtacgacacttg |
38246293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 44905012 - 44905167
Alignment:
| Q |
84 |
aggtataagtgtaatatagatgcatcattttccttgtcgctaaataaggtatgactt--aacgtgtctaagagacggataaggtaatttcatgcttgcaa |
181 |
Q |
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| T |
44905012 |
aggtataagtgtaatatagacgcatcgttttcctcatcgcttaataagataggacttgctatgtgcctaagagacaaagaatgtagctttgttcttgcta |
44905111 |
T |
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| Q |
182 |
aaactgtctggttctccccattttgtgccgtcaatgaaagtgaagcgatgggtttg |
237 |
Q |
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| T |
44905112 |
aaagcgtctggttctccccattttgtgccatcgaagtgggtgaagcgatgggtttg |
44905167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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