View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_low_29 (Length: 250)
Name: NF13925_low_29
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 13308652 - 13308889
Alignment:
| Q |
1 |
aatcaaatcatgactactccaactcagagcgaagtccgattccaaatggcaccaccaccacctgtcaagaaggaagaaatggcaatgatggggcatgacc |
100 |
Q |
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| T |
13308652 |
aatcaaatcatgactactccaactcagagcgaagtccaattccaaatggcaccaccaccacttgtcaagaaggaagaaatggcaatgatgggccatgacc |
13308751 |
T |
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| Q |
101 |
attttgggataactatgaacaatggtgacatcatgcaaagacaattatttatgaatttgatgatgaatgataatagagatgagaatgtcccatttggtca |
200 |
Q |
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| T |
13308752 |
attttgggataactatgagcaatggtgacatcatgcaaagacaattatttatgaatttgatgatgaatgataatagagatgagaatgtcccatttggtca |
13308851 |
T |
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| Q |
201 |
tcctcatgatgctagtcttcaaaatggattttggccta |
238 |
Q |
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| T |
13308852 |
tcctcatgatgctagtcttcaaaatggattttggccta |
13308889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 9894860 - 9894797
Alignment:
| Q |
77 |
aaatggcaatgatggggcatgaccattttgggataactatgaacaatggtgacatcatgcaaag |
140 |
Q |
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| T |
9894860 |
aaatggcaatgatgggtcatggctatgttgggatgactatgaacaatggtgacatcatggaaag |
9894797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 11100173 - 11100249
Alignment:
| Q |
73 |
gaagaaatggcaatgatggggcatgaccattttgggataactatgaacaatggtgacatcatgcaaagacaattatt |
149 |
Q |
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| T |
11100173 |
gaagaaatggcaattatgggtgatggccatgttgggatacctattaataatgatgacattatgcaaagacaattatt |
11100249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 11247883 - 11247759
Alignment:
| Q |
73 |
gaagaaatggcaatgatggggcatgaccattttgggataactatgaacaatggtgacatcatgcaaagacaattatttatgaatttgatgatgaatgata |
172 |
Q |
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||||||||||||| |||||| |||| |||| |||||| ||| |||| |||||||| ||||| |||| ||| | || ||| ||||||||||||| || |
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| T |
11247883 |
gaagaaatggcaaggatgggtcatggccatgctgggatgactgtgaataatggtgaaatcattgaaagtcaacttttgatgggcttgatgatgaatggta |
11247784 |
T |
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| Q |
173 |
atagagatgagaatgtcccatttgg |
197 |
Q |
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|| ||||||||| || |||||||| |
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| T |
11247783 |
atggagatgagacagttccatttgg |
11247759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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