View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13925_low_3 (Length: 578)
Name: NF13925_low_3
Description: NF13925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13925_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 14 - 560
Target Start/End: Original strand, 16634659 - 16635204
Alignment:
| Q |
14 |
agaatatataggtcaacttggtgcactaaaatttccgcatacgcgatatgttttttgccactatatgatgttttcaaaacttgaacttaatatgtgacct |
113 |
Q |
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| T |
16634659 |
agaacatataggtcaacttggtgcactaaaatttccgcattcgcaatatgtttttttacactatatgttgttttcaaaacttgaacctaaaccgtgacct |
16634758 |
T |
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| Q |
114 |
ttcaatcgcataaaaacaatttcacgttgcgtcgagacttactttcttgtaaaaaagaaaacattactggtagataaatattattccactcgatcgatac |
213 |
Q |
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| T |
16634759 |
ttcaatcacataacaacaatttcactttgcgtcgagacttactttcttgtaaaaaagaaaacattactggtagataaatattattccactcgat----ac |
16634854 |
T |
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| Q |
214 |
tggca-tgagtttttgttggtcttttaattttcatccacgatcttgtctttgacggtattcatccacaaattttcaaacaaggcacattaacatttgagt |
312 |
Q |
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| T |
16634855 |
tggcaatgagtttttgttggtcttttaattttcatccacgatcttgtctttgacagtattcatccacaaattttcaaacaatgcacattaacatttgagt |
16634954 |
T |
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| Q |
313 |
agcacaaccacaaatagtttcccatg----ttggttgttttcaccaacttgaaaaaacgcatttagagacataaactttgaaagcagaagttttatcctg |
408 |
Q |
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| T |
16634955 |
ggcacaaccccaaaacgtttcccatgcatgttggttgttttcaccaacttgaaaa-acgcatttagagacataaactttgaaagcagaagttttatcctg |
16635053 |
T |
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| Q |
409 |
tgagccaaactccgtttaaaaccttctaactgggattagaaatcactagcaacattatatggatatttatttaaaatttcaatctacttttaaggatatg |
508 |
Q |
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| T |
16635054 |
tgagccaaactccgtttaaaaccttctaactgggattagaaatcactagcaacattatatggatattcatttaaaatttcaatctacttctaaggatatg |
16635153 |
T |
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| Q |
509 |
tttgagccgctaaaaaataataacggagtgaactatgaaaacgtgttattct |
560 |
Q |
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| T |
16635154 |
tttgagccgctaaaaaataataatagagtgaac-atgaaaacgtgttattct |
16635204 |
T |
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